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JAL-3878 update branch from 2.12 merge from 2.11.2
[jalview.git]
/
src
/
jalview
/
workers
/
2023-01-30
Jim Procter
Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_over...
tree
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commitdiff
2022-12-14
Jim Procter
Merge branch 'develop' into update_212_Dec_merge_with_2...
tree
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commitdiff
2022-04-25
Mateusz Warowny
JAL-3878 log full worker repr in AlignCalcManager
tree
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commitdiff
2021-07-09
Mateusz Warowny
JAL-3690 Remove references to old AlignCalcManager.
bug/JAL-3849_aacon-parameters
tree
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commitdiff
2021-01-27
Mateusz
JAL-3690 Introduce AlignCalcManager2 tests.
feature/JAL-3690_callback-based-web-services
tree
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commitdiff
2021-01-22
Mateusz
JAL-3690 AlignCalcManager - add full support for onesho...
tree
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commitdiff
2021-01-22
Mateusz
JAL-3690 Allow unregistered workers to be run with...
tree
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commitdiff
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
tree
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commitdiff
2020-11-27
Mateusz Waronwy
JAL-3690 List.copyOf() workaround
tree
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commitdiff
2020-11-13
Mateusz Waronwy
JAL-3690 separate startup and poll code in SeqAnnotatio...
tree
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commitdiff
2020-11-12
Mateusz Waronwy
JAL-3690 - fixed state inconsistency when restarting...
tree
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commitdiff
2020-11-11
Mateusz Waronwy
JAL-3690 partially reworked AlignCalcManager
tree
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commitdiff
2020-10-26
Mateusz Waronwy
JAL-3690 - introduce shutdown method that cleans up...
tree
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commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Catch and notify about worker cancellation...
tree
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commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Fix concurrent modification exception when...
tree
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commitdiff
2020-10-21
Mateusz Warowny
JAL - 3690 AlignCalc rebuilt - FutureTask-based manager
tree
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commitdiff
2020-06-10
BobHanson
JAL-3446 AlignViewportTest
tree
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commitdiff
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2019-10-10
Jim Procter
JAL-3070 use object identity equivalence for lists...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3070 use identity equivalence for workers rather...
tree
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commitdiff
2019-09-20
Jim Procter
JAL-3070 rough-and-ready refactor of JABA SequenceAnnot...
tree
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commitdiff
2019-06-05
tva
JAL-3285 method call change tin Information to match...
tree
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commitdiff
2019-06-05
tva
JAL-3285 small method call name change missed in Consen...
tree
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commitdiff
2019-06-05
tva
JAL-3285 small code changes to ConsensusThread not...
tree
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commitdiff
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
tree
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commitdiff
2018-05-14
gmungoc
JAL-2939 check for hmm present when processing groups
tree
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commitdiff
2018-04-24
gmungoc
JAL-2939 exit calc thread if no HMM in alignment
tree
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commitdiff
2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
tree
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commitdiff
2018-03-26
gmungoc
JAL-2939 always store Information profile
tree
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commitdiff
2018-03-21
gmungoc
JAL-2629 tweaks to Information annotation updating
tree
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commitdiff
2018-03-20
gmungoc
JAL-2629 InformationThread.findOrCreateAnnotation and...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
tree
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commitdiff
2018-02-28
gmungoc
JAL-2629 some tidying of Hmmer commands (wip)
tree
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commitdiff
2018-02-22
gmungoc
JAL-2629 tidy unit tests, constants etc
tree
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commitdiff
2018-02-20
gmungoc
JAL-2629 removed SequenceI.get/setLastPosition and...
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-28
tzvanaalten
JAL-2629 add option to set HMM Logo letter height to...
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
tree
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commitdiff
2017-08-17
TZVanaalten
JAL-2629 add documentation to previous work
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-11
TZVanaalten
JAL-2629 add ability to build a HMM from a group
tree
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commitdiff
2017-08-04
TZVanaalten
JAL-2629 multiple HMMs can now be dropped onto an alignment
tree
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commitdiff
2017-08-02
TZVanaalten
JAL-2599 fix for information annotation buttons
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2228 java 1.7 compliance
tree
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commitdiff
2017-06-02
Jim Procter
JAL-2228 always create zero score annotations, since...
tree
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commitdiff
2017-06-02
Jim Procter
JAL-2228 always set minimum for count to zero for annot...
tree
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'develop' into features/JAL-2228_efficient...
tree
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commitdiff
2017-03-16
Jim Procter
Merge branch 'merges/develop_JAL2295setChimeraAttribute...
tree
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commitdiff
2017-03-15
gmungoc
Merge branch 'develop' into bug/JAL-2436featureRenderer...
tree
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commitdiff
2017-03-09
kiramt
JAL-2426 Checks on conservation thread in case we are...
tree
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commitdiff
2017-03-09
kiramt
JAL-2426 Removal of NPE in conservation thread when...
tree
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
tree
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commitdiff
2017-02-28
kiramt
JAL-2426 Removal of NPE in conservation thread when...
tree
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commitdiff
2017-02-28
kiramt
JAL-2426 Checks on conservation thread in case we are...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2228 removed ColumnCounterI, finessed recalc of...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2228 removed FeatureCounterI in favour of FeatureSe...
tree
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
tree
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commitdiff
2016-12-02
gmungoc
JAL-1933 gap value as description; minor formatting
tree
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commitdiff
2016-12-01
Jim Procter
JAL-1933 basic hack to get gap counts shown as an annot...
tree
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commitdiff
2016-11-18
gmungoc
JAL-98 with the two types missing from last commit...
bug/JAL-98consensusMemory
tree
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commitdiff
2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
tree
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commitdiff
2016-11-10
Jim Procter
JAL-2228 patch for Java 7 compatibility
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
tree
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commitdiff
2016-09-25
Jim Procter
JAL-2228 base interface for FeatureCounters and factory...
tree
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commitdiff
2016-09-25
Jim Procter
JAL-2228 interface and worker to allow multiple feature...
tree
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commitdiff
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
tree
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commitdiff
2016-08-07
Jim Procter
JAL-2068 add the worker to the currently displayed...
patch/JAL-2068_JAL-2169_multiviewannotworker
tree
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commitdiff
2016-08-02
Jim Procter
JAL-2068 reinstated false return value for notifyWorking
tree
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commitdiff
2016-07-20
gmungoc
JAL-2068 AnnotationWorker create/update annotation...
tree
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commitdiff
2016-07-19
gmungoc
JAL-2068 small refactor to reuse shared method
tree
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commitdiff
2016-07-19
gmungoc
JAL-2068 update rather than recreate AlignmentAnnotatio...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2068 scale annotation display character to width...
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-06-22
gmungoc
JAL-1982 defensive checks for null annotations array
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-2068groovyAnno...
features/JAL-2068groovyAnnotationWorker
tree
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commitdiff
2016-05-03
gmungoc
JAL-2068 minimised jalview.gui imports, test for remove...
tree
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-26
gmungoc
JAL-2068 deleting user-defined annotation removes the...
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 framework and example scripts for pluggable...
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 redundant implements clauses removed
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
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