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JAL-3224 JAL-3225 Some fixes in install4j template and build.gradle, and a correction...
[jalview.git] / src / jalview / ws / sifts /
2018-02-13 Jim ProcterJAL-2780 JAL-2781 don’t create a mapping if sequence... tree | commitdiff
2018-02-13 Jim ProcterJAL-2780 JAL-2781 only create a mapping entry or write... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 JAL-2780 include sequence start number when... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 use PDBe numbering to map between... tree | commitdiff
2018-02-11 Jim ProcterJAL-2781 mark aligned positions via StructureMapping... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 include a Mapping object in Structure... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 UNASSIGNED positions marked as Intege... tree | commitdiff
2018-02-09 Jim ProcterUse the “PDBe” or “PDB” numbering (starts from 1, corre... tree | commitdiff
2018-02-09 Jim ProcterJAL-2780 JAL-2781 should always ensure SIFTS mappings... tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 tcofoegbuJAL-2482 bug fix tree | commitdiff
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-19 tcofoegbuJAL-2482 added null check tree | commitdiff
2017-04-18 tcofoegbuJAL-2482 Bugfix tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... tree | commitdiff
2017-02-18 gmungocJAL-2416 better encapsulated 'constants' for BLOSUM62... tree | commitdiff
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not... tree | commitdiff
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired tree | commitdiff
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping tree | commitdiff
2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 updated method calls tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... tree | commitdiff
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... tree | commitdiff
2016-10-13 gmungocJAL-1479 revise warning message to suit all contexts bug/JAL-2044jmolModelBinding tree | commitdiff
2016-10-11 gmungocJAL-1479 small tidy of error message when Sifts mapping... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid... tree | commitdiff
2016-08-31 Jim ProcterJAL-1926 JAL-2106 source DB refs come from SequenceI... tree | commitdiff
2016-08-31 Jim ProcterJAL-1926 JAL-2106 resolve source DB refs using canonica... tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... tree | commitdiff
2016-06-29 tcofoegbuJAL-1479 improved Sifts PID calculation for determining... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 minor refactor and housekeeping tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme... tree | commitdiff
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... tree | commitdiff
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... tree | commitdiff
2016-03-24 tcofoegbuJAL-1479 Commented out debug sysout's for SiftsClient tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode symbol for mapping tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues... tree | commitdiff
2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe... tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 bugfix to check entire annotation... tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings tree | commitdiff
2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS... tree | commitdiff
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference... tree | commitdiff
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi... tree | commitdiff
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS... tree | commitdiff
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping tree | commitdiff
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping tree | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... tree | commitdiff
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing... tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff