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trap NPE possiblity for trees that have no associated alignment panels (usually becau...
[jalview.git]
/
src
/
jalview
/
ws
/
2010-09-07
jprocter
kick off the first time service parameter set discovery...
tree
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commitdiff
2010-09-06
jprocter
JAL-591
tree
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commitdiff
2010-09-06
jprocter
pass user preset arguments to job
tree
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commitdiff
2010-09-06
jprocter
abstracted GUI to use jalview.ws.params objects (JAL...
tree
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commitdiff
2010-09-06
jprocter
abstracted GUI to use jalview.ws.params objects (JAL...
tree
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commitdiff
2010-09-03
jprocter
distinguish between userdefined parameter set job and...
tree
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commitdiff
2010-09-03
jprocter
parameter set serialization/deserialization and preset...
tree
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commitdiff
2010-08-31
jprocter
utilities for cloning and manipulating JabaWS parameter...
tree
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commitdiff
2010-08-18
jprocter
1.5 annotation fix
tree
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commitdiff
2010-08-11
jprocter
ask user if they want to run the JabaWS tester on new...
tree
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commitdiff
2010-08-02
jprocter
jabaws is the new jaba!
tree
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commitdiff
2010-07-20
jprocter
removed 'method notes' comment in job output.
tree
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commitdiff
2010-07-20
jprocter
update to Jaba_r1 minimal client distribution, and...
tree
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commitdiff
2010-07-11
jprocter
divide services by host within the menu
tree
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commitdiff
2010-07-11
jprocter
jaba is the new name.
tree
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commitdiff
2010-07-01
jprocter
default public service URL
tree
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commitdiff
2010-06-27
jprocter
edit jws2 job parameters before running job
tree
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commitdiff
2010-06-22
jprocter
prototype - implementation in progress JAL-591
tree
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commitdiff
2010-06-21
jprocter
set program name to service type (see related issues...
tree
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commitdiff
2010-06-21
jprocter
organisation by host and service type
tree
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commitdiff
2010-06-21
jprocter
generic action text method
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commitdiff
2010-06-19
jprocter
rejigged change support to make it (more) reliable
tree
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commitdiff
2010-06-03
jprocter
typo (ahem)
tree
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commitdiff
2010-06-03
jprocter
fix and warning message in case the JWS2 jar is not...
tree
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commitdiff
2010-05-21
jprocter
more robust discovery and preset support
tree
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commitdiff
2010-05-21
jprocter
preset and argument support
tree
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commitdiff
2010-05-21
jprocter
comment about trapping OOMs
tree
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commitdiff
2010-05-21
jprocter
commented out debug code
tree
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commitdiff
2010-05-17
jprocter
status can be null to begin with
tree
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commitdiff
2010-05-17
jprocter
pullJobExecutionStats for JAL-493
tree
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commitdiff
2010-05-17
jprocter
more robust jws2 service discovery
tree
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commitdiff
2010-05-17
jprocter
refactored old jalview service code to its own package.
tree
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commitdiff
2010-05-17
jprocter
always pass full web service exception details to the log
tree
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commitdiff
2010-05-17
jprocter
always pass full web service exception details to the log
tree
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commitdiff
2010-05-17
jprocter
always log info about services that are discovered
tree
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commitdiff
2010-05-14
jprocter
First patch for * JAL-493
tree
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
tree
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commitdiff
2010-04-02
jprocter
indicate the database id source associated with the...
tree
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commitdiff
2010-04-01
jprocter
prevent duplicate service submission links
tree
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commitdiff
2010-04-01
jprocter
reinstate submission of database Ids as well as sequenc...
tree
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commitdiff
2010-04-01
jprocter
refactored copy of groupURL mechanism into new Envision...
tree
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commitdiff
2010-04-01
jprocter
new interface
tree
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commitdiff
2010-03-26
jprocter
indicate which registry timed out.
tree
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commitdiff
2010-03-11
jprocter
warning for unresolvable database source strings (or...
tree
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commitdiff
2010-02-10
jprocter
only need to remove progress bar if fetch wasn't cancel...
tree
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commitdiff
2009-06-24
jprocter
all alignment sequences associated with a dataset seque...
tree
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commitdiff
2009-06-19
jprocter
bugfix mapped reference transfer and made picr ID retri...
tree
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commitdiff
2009-06-19
jprocter
regex validator for uniprot
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commitdiff
2009-06-12
jprocter
reinstated blind querying of datasources. Transfer...
tree
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commitdiff
2009-06-12
jprocter
more ID validation
tree
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commitdiff
2009-06-08
jprocter
*experimental use of picr* apply gpl development license
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commitdiff
2009-06-08
jprocter
apply gpl development license
tree
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commitdiff
2009-02-24
jprocter
bugfix the bugfix
tree
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commitdiff
2009-02-24
jprocter
bug fixes (infinite loop when fetcher given same sequen...
tree
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commitdiff
2009-01-08
jprocter
refactor
tree
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commitdiff
2008-12-19
jprocter
simple transformation of feature types like dbref and...
tree
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commitdiff
2008-12-19
jprocter
todo
tree
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commitdiff
2008-12-19
jprocter
wsdbfetch parameter change again (uniprotkb is dbname...
tree
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commitdiff
2008-12-08
jprocter
DAS feature scores are parsed into floats on sequence...
tree
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commitdiff
2008-12-04
jprocter
fetch database references for all EBI db + selected...
tree
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commitdiff
2008-12-04
jprocter
sequence fetchers generated for local das sequence...
tree
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commitdiff
2008-12-04
jprocter
minimise exceptions for bad uniprot ids
tree
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commitdiff
2008-12-04
jprocter
select source by implementation class
tree
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commitdiff
2008-12-04
jprocter
fix null pointer exception for sources which don't...
tree
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commitdiff
2008-11-12
jprocter
bugfix to safely deal with server exception resulting...
tree
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commitdiff
2008-11-04
jprocter
bugfix db ref retrieve routine so it removes dead query...
tree
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commitdiff
2008-11-04
jprocter
implemented embl validation properly
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commitdiff
2008-11-04
jprocter
implemented embl validation properly
tree
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commitdiff
2008-09-09
jprocter
links associated with non-positional features do not...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
tree
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commitdiff
2008-08-26
jprocter
update Jpred3 service referenec
tree
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commitdiff
2008-08-26
jprocter
uses shared singleton from jalview.gui.SequenceFetcher...
tree
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commitdiff
2008-08-26
jprocter
pdb xrefs added as dbrefs and as PDB file links
tree
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commitdiff
2008-08-15
jprocter
xrefs retrieved from Uniprot
tree
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commitdiff
2008-08-06
jprocter
extra checks for datasetsequence for when getDbRefs...
tree
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commitdiff
2008-08-04
jprocter
stackoverflow fix
tree
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commitdiff
2008-08-04
jprocter
pfam seed and full alignment retrieval and nicer orderi...
tree
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commitdiff
2008-08-01
jprocter
updated jalview version of dasobert 1.53e client and...
tree
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commitdiff
2008-07-31
jprocter
refactored method for registering instance of a dbSourc...
tree
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commitdiff
2008-07-31
jprocter
quick fix for the new uniprot name schema - description...
tree
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commitdiff
2008-07-31
jprocter
added specific retrieval arguments to SequneceFetcher...
tree
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commitdiff
2008-05-26
jprocter
Uniprot is not actually a multi-acc capable source...
tree
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commitdiff
2008-05-26
jprocter
bugfix so MULTI_ACC capable sources value property...
tree
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commitdiff
2008-04-29
jprocter
added SeqSearch service interface. Documented and refac...
tree
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commitdiff
2008-04-17
jprocter
bugfix for refactoring (webservice windows wouldn't...
tree
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commitdiff
2008-04-17
jprocter
javadoc and refactor of setWebService method to allow...
tree
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commitdiff
2008-04-17
jprocter
javadoc for webservice client tutorial
tree
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commitdiff
2008-04-17
jprocter
todos
tree
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commitdiff
2008-04-11
jprocter
fix JPred thread so job aborts if submission fails.
tree
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commitdiff
2008-02-22
jprocter
explicit quote of chaincode in errror message
tree
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commitdiff
2008-01-22
jprocter
ensured that seqeunce feature shift takes into account...
tree
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commitdiff
2007-12-21
jprocter
uniprotxml format comment (ebi changed service parameter)
tree
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commitdiff
2007-12-21
jprocter
sequence db fetcher and db reference validation/annotat...
tree
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commitdiff
2007-11-16
jprocter
typo
tree
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commitdiff
2007-11-16
jprocter
javadoc
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commitdiff
2007-11-16
jprocter
added generic method for adding new database proxies...
tree
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commitdiff
2007-11-16
jprocter
refactored ebi soap client and AbstractSequenceFetcher...
tree
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commitdiff
2007-11-16
jprocter
refactor abstract sequence fetching and DBSource machin...
tree
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commitdiff
2007-11-12
jprocter
added mechanism to initiate DAS feature fetching progra...
tree
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commitdiff
2007-10-31
jprocter
factored out reference to parent alignFrame (so all...
tree
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commitdiff
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