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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git]
/
src
/
jalview
/ ws
2016-04-26
Jim Procter
JAL-2079 fix broken cherry-pick conflict merge
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commitdiff
2016-04-26
Jim Procter
JAL-2079 use new service to retrieve Rfam Seed alignment
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commitdiff
2016-04-26
Jim Procter
JAL-2079 disable RFAM(Full) source until we can retriev...
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commitdiff
2016-04-26
Jim Procter
JAL-2079 update URL for RFAM and PFAM sources
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commitdiff
2016-04-26
Jim Procter
JAL-2079 allow prefix+<XFAMID>+suffix type URL signature
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2016-04-26
gmungoc
JAL-2068 deleting user-defined annotation removes the...
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2016-04-25
tcofoegbu
develop merge
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2016-04-22
gmungoc
JAL-2068 redundant implements clauses removed
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commitdiff
2016-04-19
tcofoegbu
JAL-2071 architectural improvement for Plugable Free...
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commitdiff
2016-04-13
tcofoegbu
JAL-2047 delay to allow table model initilisation to...
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commitdiff
2016-04-06
tcofoegbu
merge
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commitdiff
2016-04-06
tcofoegbu
JAL-2047 JAL-1919 fixed empty tooltip text when a cell...
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commitdiff
2016-04-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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commitdiff
2016-04-01
tcofoegbu
JAL-2045 JAL-2047 improvement for sorting PDB quality...
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2016-03-28
gmungoc
JAL-1705 Javadoc / debug output tweaks
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commitdiff
2016-03-28
gmungoc
JAL-2016 push getFeatureColourScheme(source) into Seque...
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2016-03-28
gmungoc
JAL-2036 update AlignFrame menus when dbreffetcher...
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2016-03-24
tcofoegbu
JAL-1479 Commented out debug sysout's for SiftsClient
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commitdiff
2016-03-24
tcofoegbu
JAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
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2016-03-23
tcofoegbu
merge
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2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
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2016-03-23
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-03-23
gmungoc
JAL-1997 default empty tooltip required for correct...
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2016-03-22
tcofoegbu
resolve conflict with Mungo's merge
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2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
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2016-03-21
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-03-21
tcofoegbu
develop merge
features/JAL-1919_mmCIF-Support
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2016-03-21
gmungoc
JAL-1855 dbfetch from /ena_sequence/, /ena_coding/
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2016-03-21
gmungoc
JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
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2016-03-21
tcofoegbu
JAL-2028 added improvement for preconfigured ordering...
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2016-03-21
tcofoegbu
develop merge
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2016-03-16
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-03-16
tcofoegbu
JAL-2028 improvment to the displayed column customisation
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2016-03-15
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
mungo_develop
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2016-03-15
gmungoc
JAL-2016 FeatureSettingsI now FeatureSettingsModelI
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2016-03-11
tcofoegbu
JAL-2026 Bug fix for best quality filter
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2016-03-11
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-03-11
gmungoc
JAL-1705 refactoring etc for fetching Ensembl --> Uniprot
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2016-03-10
tcofoegbu
develop merge
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2016-03-10
tcofoegbu
JAL-2024 code to enforce case insensitivity for manual...
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2016-03-03
tcofoegbu
JAL-1919 updated unicode mapping symbol
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2016-03-03
tcofoegbu
JAL-1919 updated unicode symbol for mapping
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2016-03-03
gmungoc
JAL-1705 include stop codons in derived CDS; support...
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2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
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2016-02-25
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-02-24
gmungoc
JAL-2015 JAL-1956 rollout of FeatureColourI in place of
JAL-1956_featureStyles
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commitdiff
2016-02-23
tcofoegbu
JAL-1720 renamed Structure Chooser filters according...
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2016-02-22
tcofoegbu
JAL-1720 JAL-2002 improvement for 'uniprot coverage...
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2016-02-22
gmungoc
JAL-1705 first pass at applying preset feature colourin...
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2016-02-20
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-02-19
tcofoegbu
JAL-2009 Codes to enable storing inserted residues...
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2016-02-12
gmungoc
JAL-1270 remove trailing space + test
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2016-02-12
gmungoc
JAL-1705 various refactoring towards Uniprot-to-Ensembl...
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2016-02-04
gmungoc
JAL-1705 temporary variable to aid inspection in debugger
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2016-02-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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2016-01-27
tcofoegbu
JAL-1479 fixed off-by-one error in SIFTS mapping output...
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2016-01-26
tcofoegbu
develop merge
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2016-01-26
tcofoegbu
JAL-1999 JAL-1479 implemented configurable fail-safe...
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2016-01-25
gmungoc
JAL-1705 EnsemblGene added, and related refactoring
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2016-01-25
gmungoc
JAL-1997 database browser support tooltip if available
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2016-01-21
tcofoegbu
JAL-1479 JAL-1979 bugfix to check entire annotation...
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2016-01-21
gmungoc
JAL-1705 redundant comment removed
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2016-01-21
gmungoc
JAL-1705 unused import removed
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2016-01-21
tcofoegbu
JAL-1479 JAL-1979 updated the modified-aminoacid triple...
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2016-01-21
gmungoc
JAL-1705 get xrefs only for dna/peptide; code tidy
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2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
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2016-01-08
gmungoc
JAL-1705 DbSourceProxy properties converted to methods...
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2016-01-07
tcofoegbu
JAL-1479 implemented timestamp based caching of SIFTS...
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2016-01-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-1705_...
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2016-01-05
gmungoc
JAL-653 typed map for feature colours in method signature
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2015-12-22
gmungoc
JAL-653 hold AlignedCodonFrame collections as list...
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2015-11-25
tcofoegbu
JAL-1479 refactored DBRef fetching code to StructureCho...
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2015-11-25
tcofoegbu
JAL-1479 applet build debug
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2015-11-25
tcofoegbu
JAL-1479 bugfix after decoupling SIFTS preference settings
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2015-11-23
tcofoegbu
JAL-1479 commented out DBRef fetching code from SIFTS...
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2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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2015-11-17
tcofoegbu
JAL-1479 Refactored Sifts configuration preference...
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2015-11-16
tcofoegbu
JAL-1967 JAL-1479 refactored sequence<->structure mappi...
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2015-11-13
tcofoegbu
JAL-1479 added transfer of residue annotation for SIFTS...
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2015-11-11
tcofoegbu
JAL-1957 JAL-1479 Further optimisation of SIFTs Client...
features/JAL-1479_SIFTS-mapping
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2015-11-05
tcofoegbu
JAL-1479 SiftClient house keeping
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2015-11-02
tcofoegbu
JAL-1955 Uniprot sequence fetcher refactor
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2015-10-29
tcofoegbu
JAL-1926 JAL-1479 updated PDBfile fetcher to add source...
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2015-10-28
tcofoegbu
JAL-1479 added support for SIFTs mapping output viewing...
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2015-10-28
tcofoegbu
JAL-1887 JAL-1479 bugfix for incorrect start/end for...
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2015-10-22
tcofoegbu
JAL-1479 added basic support for SIFTs mapping - more...
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2015-10-22
tcofoegbu
JAL-1942 JAL-1479 DBRefFetcher refactor
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
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2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-10-08
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-10-07
Jim Procter
JAL-1894 source formatting
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-09-30
tcofoegbu
JAL-1852 made disabling querying of unpublished PDB...
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commitdiff
2015-09-30
tcofoegbu
JAL-1852 disable querying of unpublished PDB entries...
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2015-09-24
gmungoc
JAL-1904 parse feature file colours on to alignment...
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2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-09-14
gmungoc
JAL-1851 add retrieved sequence's start (-1) to match...
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