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JAL-6386 update slivka client for j2s compatibility
[jalview.git] / src / jalview / ws /
2020-07-08 Mateusz WarownyJAL-6386 update slivka client for j2s compatibility tree | commitdiff
2020-02-04 MMWarownyJAL-3515 Extract core WSDiscoverer methods to a separat... tree | commitdiff
2019-12-05 MMWarownyJAL-3066 Comment on ambiguous parameter parsing. tree | commitdiff
2019-12-05 MMWarownyJAL-3066 Change Slivka connection to https tree | commitdiff
2019-11-28 MMWarownyJAL-3066 Fix incorrect URL resolving with /slivka prefix. tree | commitdiff
2019-11-15 MMWarownyJAL-3066 Change server to compbio.dundee.ac.uk/slivka tree | commitdiff
2019-11-04 MMWarownyInclude missing job states. tree | commitdiff
2019-10-11 Mateusz WarownyJAL-3066 Create labels for fields and hack it to work... tree | commitdiff
2019-10-11 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi... tree | commitdiff
2019-10-11 Mateusz WarownyJAL-3066 change service type naming to avoid menu entry... tree | commitdiff
2019-10-10 Jim ProcterJAL-3070 set calcId and autocalculated flags for annota... tasks/JAL-3070_wsinterfaces tree | commitdiff
2019-10-10 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha... tree | commitdiff
2019-10-10 Jim ProcterJAL-3070 registerWorker start its thread automatically... tree | commitdiff
2019-10-09 Mateusz WarownyJAL-3066 Read parameters directly from args list allowi... tree | commitdiff
2019-10-09 Mateusz WarownyJAL-3066 Fix log files retrieval. tree | commitdiff
2019-10-07 Mateusz WarownyJal-3066 Retrieve job log and error log from the server. tree | commitdiff
2019-10-07 Jim ProcterRevert "JAL-3070 JAL-3066 fix initialisation of slivka... tree | commitdiff
2019-10-07 Mateusz WarownyJAL-3066 AACon: pass the instance name of the service... tree | commitdiff
2019-10-07 Mateusz WarownyJAL-3066 Check if annotation and features are present... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 report job ID when submitted tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 debug info: check response when adding feature... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 JAL-3070 AACon: pass the name of the service... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 hack to instantiate the correct client accordi... tree | commitdiff
2019-10-07 Jim ProcterJAL-3070 JAL-3066 provide standard concrete instances... tree | commitdiff
2019-10-07 Jim ProcterJAL-3070 JAL-3066 fix initialisation of slivka ServiceW... tree | commitdiff
2019-10-07 Jim ProcterJAL-3070 formatting tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 reinstate the internal test service URL for... tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 slivka service discovery as a background threa... tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 alignment analysis service worker UI and setti... tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 call checkDone() ASAP to avoid race condition... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 decouple WsMenuEntryProviderI code from JABAWS tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 reorganise prior to refactor tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 make AlignCalcUI service code work only with... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 discoverers return ServiceWithParameter, now... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 decontaminate the ‘preferred service’ methods... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 JAL-3062 tidy up slivka ws menu builder and... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 detect failed/broken annotation web service... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 pull up generic methods for an automatic align... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 TODO tree | commitdiff
2019-10-01 Mateusz WarownyJAL-3066 Sequence annotation services. tree | commitdiff
2019-09-27 Mateusz WarownyJAL-3066 Automatically discoverable Protein sequence... tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 oops - refactor Slivka’s service stub too :) tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-3067 refactor annotation web... tree | commitdiff
2019-09-24 Jim ProcterJAL-3070 tidying tree | commitdiff
2019-09-23 Jim ProcterJAL-3066 JAL-3070 pull up non-jabaws specific service... tree | commitdiff
2019-09-23 Mateusz WarownyJAL-3066 Annotation Service Instance stub tree | commitdiff
2019-09-23 Mateusz WarownySlivkaWSDiscoverer formatting fix tree | commitdiff
2019-09-23 Mateusz WarownyJAL-3066 Move common web service methods to abstract... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 configure annotation service manager from... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 rename AbstractJabaCalcWorker to SeqAnnotation... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 ensure RNAAliFold annotation rows display... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 formatting tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 detect presence of existing JABA RNAAliFold... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 match AbstractJabaCalcWorker’s annotation... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 javadoc for (mostly) jabaws specific methods tree | commitdiff
2019-09-20 Jim ProcterJAL-3070 rough-and-ready refactor of JABA SequenceAnnot... tree | commitdiff
2019-09-20 Jim ProcterJAL-3070 JAL-1379 deferred work on annotation based... tree | commitdiff
2019-09-19 Mateusz WarownyJAL-3066 Auto discover multiple sequence alignment... tree | commitdiff
2019-09-16 Mateusz WarownySet the initial value of the choice field to the defaul... tree | commitdiff
2019-09-16 Mateusz WarownyAdd the remaining msa services to the Discoverer tree | commitdiff
2019-09-11 Mateusz WarownyChange choice field to use dropbox instead of radio... tree | commitdiff
2019-09-11 Mateusz WarownyCreate generic msa service instance tree | commitdiff
2019-09-06 Mateusz WarownyMerge remote-tracking branch 'origin/alpha/JAL-3066_Jal... tree | commitdiff
2019-09-06 Mateusz WarownyJAL-3066 Working custom parameters for clustalo tree | commitdiff
2019-09-06 Jim ProcterJAL-3066 fix compile error (@matesuz - this will confli... tree | commitdiff
2019-09-06 Jim ProcterJAL_1426 JAL-3066 update Apache James mime parser and... tree | commitdiff
2019-09-05 Mateusz WarownyJAL-3066 Implement clustaloWS using slivka system. tree | commitdiff
2019-07-10 Jim ProcterJAL-3070 standard way of storing/recovering documentati... tree | commitdiff
2019-07-10 Jim ProcterJAL-3070 remove final reference to Jws2Instance tree | commitdiff
2019-07-10 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha... tree | commitdiff
2019-07-10 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop... tree | commitdiff
2019-06-26 Jim ProcterJAL-3332 test to check for duplicate db sources and... tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 dbreffetcher: record any feature display model... tree | commitdiff
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer tree | commitdiff
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... tree | commitdiff
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence... tree | commitdiff
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with... tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... tree | commitdiff
2019-03-06 gmungocJAL-3035 more das bits removed tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... tree | commitdiff
2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen... tree | commitdiff
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... tree | commitdiff
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour tree | commitdiff
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB tree | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... tree | commitdiff
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-08-06 Jim ProcterJAL-3070 additional interfaces for web services (not... tree | commitdiff
2018-08-03 Jim ProcterJAL-3070 MsaWSClient doens’t depend on Jws2Instance... tree | commitdiff
2018-08-03 Jim ProcterJAL-3070 web service handle with UIinfo.hasParameters... tree | commitdiff
2018-08-02 Jim ProcterJAL-3070 base interface for service endpoint implementa... tree | commitdiff
2018-08-02 Jim ProcterJAL-3070 set host URL correctly from parsed description... tree | commitdiff
2018-08-01 Jim ProcterJAL-3070 refactored Client specific code from jalview... tree | commitdiff
2018-07-27 Jim ProcterJAL-3070 pull up sequence anonymisation hash, presets... tree | commitdiff
2018-07-26 Jim ProcterJAL-3070 pull up logic for offering a parameters dialog... tree | commitdiff
2018-07-26 Jim ProcterJAL-3070 abstract class for services with adjustable... tree | commitdiff
2018-07-26 Jim ProcterJAL-3070 use ArgumentI in all public constructors,... tree | commitdiff
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