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Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
[jalview.git] / src / jalview / ws /
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_1_Branch tree | commitdiff
2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handlin... tree | commitdiff
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences... tree | commitdiff
2013-10-05 Jim ProcterJAL-1379 JAL-1378 exclusion list property to ignore... tree | commitdiff
2013-10-05 Jim ProcterJAL-1378 hack to place 'Predictors' into Secondary... tree | commitdiff
2013-10-05 Jim ProcterJAL-1364 use gapMap to map RNAalifold annotation onto... tree | commitdiff
2013-10-05 Jim ProcterJAL-1379 JAL-1358 only enable/disable menu entries... tree | commitdiff
2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 unified GUI building for AACon and RNAAliFold... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 use AlignAnalysisUIText class to provide metad... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 refactored core methods from RNAAliFold and... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 new metadata class to describe instantaneous... tree | commitdiff
2013-09-20 Jim Procterformatting tree | commitdiff
2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into RNAalifold tree | commitdiff
2013-08-30 Daniel BartonColour be RNA helices bug fixed tree | commitdiff
2013-08-30 Daniel BartonJAL-1358 Cleaned up RNAalifoldClient.java. RNA helices... tree | commitdiff
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 jalview displays some RNA struture annotation... tree | commitdiff
2013-08-27 Jim ProcterJAL-1359 simpler logic for deciding if all threads... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 Just the eclipse project/classpath files so... tree | commitdiff
2013-06-19 Jim ProcterJAL-1240 avoid NPE when source has no proxy available tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 ascending alphabetical order tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 sort options and parameters according to their... tree | commitdiff
2013-06-18 Jim Proctertypo tree | commitdiff
2013-06-17 Jim ProcterJAL-1319 (blacklist fix) check for presence of a score... tree | commitdiff
2013-06-09 Jim Procterfix for JAL-1298 tree | commitdiff
2013-06-09 Jim ProcterJAL-715 - TODO tree | commitdiff
2013-06-07 Jim ProcterJAL-1309 fix broken partition computation for adding... tree | commitdiff
2013-06-07 Jim ProcterJAL-945 uniquify prior to submission tree | commitdiff
2013-06-07 Jim Procterformatting tree | commitdiff
2013-06-07 Jim ProcterJAL-715 allow headless construction for testing tree | commitdiff
2013-06-07 Jim ProcterJAL-724 JAL-715 refactor and create new test for RSBS... tree | commitdiff
2013-05-24 Jim Proctertypo tree | commitdiff
2013-01-18 jprocterJAL-1238 order to place primary sources before lower... tree | commitdiff
2013-01-18 jprocterJAL-1238 method to test if DAS source is a primary... tree | commitdiff
2013-01-18 jprocterJAL-1238 tier index indicating distance of a source... tree | commitdiff
2012-12-11 jprocterJAL-1217 check and avoid NPE if no datastore object... tree | commitdiff
2012-12-11 jprocterJAL-1217 report exception for service when no datastore... tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch... tree | commitdiff
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr... tree | commitdiff
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to... tree | commitdiff
2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global... tree | commitdiff
2012-09-21 jprocterJAL-1165 visual delay whilst results are processed. tree | commitdiff
2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition tree | commitdiff
2012-09-05 jprocterformatting tree | commitdiff
2012-09-05 jprocterpatch for NPE when no services are available to resolve... tree | commitdiff
2012-09-05 jprocterJAL-975 null any existing preset if user has supplied... tree | commitdiff
2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run tree | commitdiff
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI tree | commitdiff
2012-09-04 jprocteroff by one for sequence associated annotation tree | commitdiff
2012-09-04 jprocterunused variable tree | commitdiff
2012-09-04 jprocterJAL-974 JRonn thresholds tree | commitdiff
2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after... tree | commitdiff
2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotati... tree | commitdiff
2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcin... tree | commitdiff
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved... tree | commitdiff
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen... tree | commitdiff
2012-08-31 jprocterJAL-974 - ensure annotation created in local sequence... tree | commitdiff
2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names... tree | commitdiff
2012-08-29 jprocterJAL-974 skip empty rows tree | commitdiff
2012-08-29 jprocterJAL-974 set GlobPlot raw/smooth score annotation rows... tree | commitdiff
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null... tree | commitdiff
2012-08-28 jprocterremove contaminant imports tree | commitdiff
2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documenta... tree | commitdiff
2012-08-28 jprocterformatting tree | commitdiff
2012-08-28 jprocterformatting tree | commitdiff
2012-08-28 jprocterJAL-974 create mixture of sequence features marking... tree | commitdiff
2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from... tree | commitdiff
2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server error... tree | commitdiff
2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service... tree | commitdiff
2012-08-07 jprocterJAL-1137 clean up old-style menu code and look tree | commitdiff
2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service... tree | commitdiff
2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client... tree | commitdiff
2012-08-03 jprocterJAL-1136 allow parameter sets to be transferred across... tree | commitdiff
2012-08-03 jprocterJAL-1136 less code-dependent formula for creating serve... tree | commitdiff
2012-08-03 jprocterJAL-1136 - fix abstraction for parameter container... tree | commitdiff
2012-08-02 jprocterJAL-976 better logging/error reporting for disorder... tree | commitdiff
2012-08-01 jprocterJAL-976 don't clear menu out before adding jabaws servi... tree | commitdiff
2012-07-08 jprocterJAL-976 clean out associated annotation tree | commitdiff
2012-07-08 jprocterJAL-976 implement additional calcId method tree | commitdiff
2012-07-08 jprocterJAL-976 simpler parameter update model tree | commitdiff
2012-07-08 jprocterJAL-961 JAL-976 allow access to service URI for paramet... tree | commitdiff
2012-07-08 jprocterJAL-961 JAL-976 recover current settings from associate... tree | commitdiff
2012-07-08 jprocterJAL-976 pick an available instance of a service based... tree | commitdiff
2012-07-08 jprocterbugfix - use currently held parameters tree | commitdiff
2012-07-08 jprocterJAL-976 - storing service parameters on the view model tree | commitdiff
2012-07-06 jprocterJAL-976 test if the sliders have been modified from... tree | commitdiff
2012-07-06 jprocterunique URI for service type tree | commitdiff
2012-07-06 jprocterJAL-961 JAL-976 abstracted container for dynamic calcul... tree | commitdiff
2012-07-03 jprocterJAL-961 allow calcId to be specified independently... tree | commitdiff
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