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Merge commit 'alpha/update_2_12_for_2_11_2_series_merge^2' into HEAD
[jalview.git] / src / jalview / ws /
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... tree | commitdiff
2021-09-29 Jim ProcterJAL-3884 squish alarming but harmless errors when unipr... tree | commitdiff
2021-09-29 Jim ProcterJAL-3881 split on any nonalphanumeric symbol (plus... tree | commitdiff
2021-09-23 Jim ProcterJAL-3692 JAL-3861 remove extra call to .parse() so... tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-16 Ben SoaresJAL-3739 (combined) commits from feature/JAL-3739_useFo... tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 JAL-3855 ignore case when detecting alphafold ID tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 3d-beacons doesn’t work as a sequence source... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism... tree | commitdiff
2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot... tree | commitdiff
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... tree | commitdiff
2021-08-30 arngucciJAL-3829_spike minor changes tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB... tree | commitdiff
2021-05-12 Mateusz WarownyRevert "Merge branch 'bug/JAL-3807_jpred-with-slivka... tree | commitdiff
2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code... tree | commitdiff
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3807_jpred-with-slivka' into... tree | commitdiff
2021-02-22 Mateusz WarownyJAL-3807 - Add single sequence capabilities to jws2... tree | commitdiff
2021-02-22 Mateusz WarownyJAL-3807 - Move new JPred client to the jws2 package. tree | commitdiff
2021-02-22 Mateusz WarownyJAL-3807 - Re-implement results processing. tree | commitdiff
2021-02-22 MateuszJAL-3807 JPred can now successfully submit and track... tree | commitdiff
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3809_ws_params_dialog_fix' into... tree | commitdiff
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3810_annotation_ws_stopping_abrup... bug/JAL-3809_ws_params_dialog_fix tree | commitdiff
2021-02-22 Mateusz WarownyJAL-3809 - Fixed param edit dialog for jalviewjs. tree | commitdiff
2021-02-22 MateuszMerge branch 'feature/JAL-3690_callback-based-web-servi... tree | commitdiff
2021-02-17 Jim ProcterMerge branch 'feature/JAL-3692enaEndpoint' into patch... tree | commitdiff
2021-02-05 Mateusz WarownyJAL-3810 - Replace log.trace() calls with log.debug() tree | commitdiff
2021-01-22 MateuszJAL-3690 AACon ws menu entry fix. tree | commitdiff
2021-01-22 MateuszJAL-3690 Fix typo in enum name in slivka client. tree | commitdiff
2021-01-22 MateuszJAL-3690 Fixed slivka wsmenu categories. tree | commitdiff
2020-12-18 Jim ProcterJAL-3690 recoded AWSThread to use javax.swing.Timer... merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services tree | commitdiff
2020-12-17 Jim ProcterJAL-3690 patch out use of java.streams/spliterator... tree | commitdiff
2020-12-15 Jim ProcterJAL-3690 patch out need for java.time in j2s (see https... tree | commitdiff
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop tree | commitdiff
2020-11-13 Mateusz WaronwyJAL-3690 separate startup and poll code in SeqAnnotatio... tree | commitdiff
2020-11-06 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF... tree | commitdiff
2020-10-21 Mateusz WarownyJAL - 3690 AlignCalc rebuilt - FutureTask-based manager tree | commitdiff
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... tree | commitdiff
2020-07-27 gmungocJAL-3692 refactor/complete parsing, more unit test... tree | commitdiff
2020-07-22 Mateusz WarownyJAL-3690 changed AWSThread to use Timer instead tree | commitdiff
2020-07-21 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... tree | commitdiff
2020-07-20 Mateusz WarownyJAL-3690 alternative servers menu fix tree | commitdiff
2020-07-17 Mateusz WarownyJAL-3690 restore jws1 JPred tree | commitdiff
2020-07-16 Mateusz WarownyJAL-3690 switching to CompletableFuture to allow chaining tree | commitdiff
2020-07-15 Mateusz WarownyJAL-3690 refactoring web-services discovery tree | commitdiff
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112 tree | commitdiff
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update... tree | commitdiff
2020-07-08 Mateusz WarownyJAL-3683 retrieve job status to output stream feature/JAL-3686_slivka_client_js_update tree | commitdiff
2020-07-08 Mateusz WarownyJAL-6386 update slivka client for j2s compatibility tree | commitdiff
2020-07-08 Mateusz WarownyMerge branch 'feature/JAL-3515-slivka-preferences'... tree | commitdiff
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... tree | commitdiff
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam tree | commitdiff
2020-06-30 gmungocJAL-3446 unused imports removed tree | commitdiff
2020-06-11 gmungocJAL-3624 unneeded import removed tree | commitdiff
2020-06-09 BobHansonJAL-3446 from JAL-3253-applet SequenceFetcher.getInsta... tree | commitdiff
2020-06-06 BobHansonJAL-3446 no actual changes; just using meaningful frame... tree | commitdiff
2020-06-05 BobHansonJAL-3446 UrlDownloadClient and Test tree | commitdiff
2020-06-03 BobHansonJAL-3446 adds SIFTs JAL-3625 SiftsClient tree | commitdiff
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... tree | commitdiff
2020-06-03 BobHansonJAL-3446 from JAL-3253 Discoverers tree | commitdiff
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... tree | commitdiff
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Desktop and Jws2Discovere... tree | commitdiff
2020-06-01 BobHansonJAL-3626 Regex optimization from JAL-3253-applet; also... tree | commitdiff
2020-05-29 gmungocMerge branch 'feature/JAL-3551Pymol' into develop tree | commitdiff
2020-05-28 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS tree | commitdiff
2020-05-28 gmungocJAL-3624 use temp file for SIFT download in JS, correct... tree | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-05-19 gmungocJAL-3624 use temp file for SIFT download in JS, correct... feature/JAL-3624siftsInJS tree | commitdiff
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS tree | commitdiff
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into... tree | commitdiff
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_... tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX tree | commitdiff
2020-02-06 MMWarownyImplement simple media type recognition. tree | commitdiff
2020-02-04 MMWarownyJAL-3515 Extract core WSDiscoverer methods to a separat... tree | commitdiff
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into... tree | commitdiff
2019-12-13 gmungocJAL-2422 basic proof of concept of ChimeraX opened... tree | commitdiff
2019-12-05 MMWarownyJAL-3066 Comment on ambiguous parameter parsing. tree | commitdiff
2019-12-05 MMWarownyJAL-3066 Change Slivka connection to https tree | commitdiff
2019-11-28 MMWarownyJAL-3066 Fix incorrect URL resolving with /slivka prefix. tree | commitdiff
2019-11-15 MMWarownyJAL-3066 Change server to compbio.dundee.ac.uk/slivka tree | commitdiff
2019-11-04 MMWarownyInclude missing job states. tree | commitdiff
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files tree | commitdiff
2019-10-11 Mateusz WarownyJAL-3066 Create labels for fields and hack it to work... tree | commitdiff
2019-10-11 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi... tree | commitdiff
2019-10-11 Mateusz WarownyJAL-3066 change service type naming to avoid menu entry... tree | commitdiff
2019-10-10 Jim ProcterJAL-3070 set calcId and autocalculated flags for annota... tasks/JAL-3070_wsinterfaces tree | commitdiff
2019-10-10 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha... tree | commitdiff
2019-10-10 Jim ProcterJAL-3070 registerWorker start its thread automatically... tree | commitdiff
2019-10-09 Mateusz WarownyJAL-3066 Read parameters directly from args list allowi... tree | commitdiff
2019-10-09 Mateusz WarownyJAL-3066 Fix log files retrieval. tree | commitdiff
2019-10-07 Mateusz WarownyJal-3066 Retrieve job log and error log from the server. tree | commitdiff
2019-10-07 Jim ProcterRevert "JAL-3070 JAL-3066 fix initialisation of slivka... tree | commitdiff
2019-10-07 Mateusz WarownyJAL-3066 AACon: pass the instance name of the service... tree | commitdiff
2019-10-07 Mateusz WarownyJAL-3066 Check if annotation and features are present... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 report job ID when submitted tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 debug info: check response when adding feature... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 JAL-3070 AACon: pass the name of the service... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 hack to instantiate the correct client accordi... tree | commitdiff
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