JAL-3855 try harder to ignore DNA/RNA only structures when deciding whether to downlo...
[jalview.git] / src / jalview / ws /
2017-11-06 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon...
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-06 Jim ProcterJAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP...
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP...
2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https
2017-09-14 gmungocJAL-2541 revised cut with features (work in progress)
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-09-01 gmungocJAL-2488 remove finalize methods
2017-08-22 Jim ProcterJAL-1551 formatting
2017-08-22 Jim ProcterJAL-2681 canonicalise DB source before fetching to...
2017-08-22 Jim ProcterJAL-2681 formatting
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-14 Jim ProcterJAL-2335 choose appropriate alphabet for filtering...
2017-08-14 Jim ProcterJAL-2335 source formatting
2017-08-14 Jim ProcterJAL-2335 filterNonStandardResidues configurable for...
2017-08-14 Jim ProcterJAL-2663 flag and filter to exclude non-standard amino...
2017-08-14 Jim ProcterJAL-2663 source formatting
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-09 Jim ProcterJAL-2426 Rfam download suffix
2017-08-09 Jim ProcterJAL-2426 JAL-1270 report Xfam download URL used if...
2017-08-09 Jim ProcterJAL-2425 raw stockholm download URLs
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method...
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to...
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for...
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure...
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 tcofoegbuJAL-2482 bug fix
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-19 tcofoegbuJAL-2482 added null check
2017-04-18 tcofoegbuJAL-2482 Bugfix
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues
2017-03-23 kiramtJAL-2314 Tidies
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect...
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
2017-02-18 gmungocJAL-2416 better encapsulated 'constants' for BLOSUM62...
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-15 kiramtJAL-2316 Changes following review.
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor...
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping
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