format adapter should return AlignmentI
[jalview.git] / src / jalview / ws /
2012-11-17 jproctercall annotate3d service and parse rnaml to alignment
2012-11-17 jprocterformatting
2012-11-17 jproctersimple HTTP multipart entity poster - may not be useful
2012-11-15 jproctersource formatting
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch...
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr...
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources...
2012-10-03 jprocterformatting
2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to...
2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global...
2012-09-21 jprocterJAL-1165 visual delay whilst results are processed.
2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition
2012-09-05 jprocterformatting
2012-09-05 jprocterpatch for NPE when no services are available to resolve...
2012-09-05 jprocterJAL-975 null any existing preset if user has supplied...
2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
2012-09-04 jprocteroff by one for sequence associated annotation
2012-09-04 jprocterunused variable
2012-09-04 jprocterJAL-974 JRonn thresholds
2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after...
2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotati...
2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcin...
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved...
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen...
2012-08-31 jprocterMerge branch 'develop' into menard
2012-08-31 jprocterJAL-974 - ensure annotation created in local sequence...
2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names...
2012-08-29 jprocterJAL-974 skip empty rows
2012-08-29 jprocterJAL-974 set GlobPlot raw/smooth score annotation rows...
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null...
2012-08-28 jprocterremove contaminant imports
2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documenta...
2012-08-28 jprocterformatting
2012-08-28 jprocterformatting
2012-08-28 jprocterJAL-974 create mixture of sequence features marking...
2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from...
2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server error...
2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service...
2012-08-20 jprocterJAL-1028 utilities package for accessing synchronous...
2012-08-17 jprocterMerge branch 'develop' into menard
2012-08-14 Anne Menardlast version stay many bugs ..
2012-08-07 jprocterJAL-1137 clean up old-style menu code and look
2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service...
2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client...
2012-08-03 jprocterJAL-1136 allow parameter sets to be transferred across...
2012-08-03 jprocterJAL-1136 less code-dependent formula for creating serve...
2012-08-03 jprocterJAL-1136 - fix abstraction for parameter container...
2012-08-02 jprocterJAL-976 better logging/error reporting for disorder...
2012-08-01 jprocterJAL-976 don't clear menu out before adding jabaws servi...
2012-07-16 Anne MenardLast version
2012-07-08 jprocterJAL-976 clean out associated annotation
2012-07-08 jprocterJAL-976 implement additional calcId method
2012-07-08 jprocterJAL-976 simpler parameter update model
2012-07-08 jprocterJAL-961 JAL-976 allow access to service URI for paramet...
2012-07-08 jprocterJAL-961 JAL-976 recover current settings from associate...
2012-07-08 jprocterJAL-976 pick an available instance of a service based...
2012-07-08 jprocterbugfix - use currently held parameters
2012-07-08 jprocterJAL-976 - storing service parameters on the view model
2012-07-06 jprocterJAL-976 test if the sliders have been modified from...
2012-07-06 jprocterunique URI for service type
2012-07-06 jprocterJAL-961 JAL-976 abstracted container for dynamic calcul...
2012-07-05 Anne MenardAdd support RNAML format
2012-07-03 jprocterJAL-961 allow calcId to be specified independently...
2012-07-02 jprocterJAL-974 create graduated feature colours for annotation...
2012-06-20 jprocterformatting
2012-06-19 jprocterJAL-976 JAL-975 JAL-1119 - pass on any existing paramet...
2012-06-19 jprocterJAL-975 JAL-1119 - prototype adjustable AACons paramete...
2012-06-19 jprocterJAL-975 - doh! valid result if width matches *ungapped...
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren...
2012-06-19 jprocterJAL-975 - ensure we only submit ungapped, padded alignm...
2012-06-14 jprocterJAL-975 JAL-1002 ensure custom parameters are actually...
2012-06-14 jprocterJAL-1115 - synchronized access to group list
2012-06-14 jprocterJAL-976 - make sure annotation panel is updated to...
2012-06-14 jprocterJAL-961 JAL-976 kill any existing AACon job if a new...
2012-06-14 jprocterJAL-1003 visual delay when running a sequence or alignm...
2012-06-14 jprocterJAL-961 JAL-976 tweaked way that AACons client is regis...
2012-06-14 jprocterformatting
2012-06-14 jprocterformatting
2012-06-07 jprocterJAL-976 ensure job id gets written out if there's an...
2012-06-04 jprocterjavatidy
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-23 jprocterTODO for JAL-976
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried...
2012-05-14 jprocterJAL-1095 - todo
2012-05-14 jprocterjavadoc
2012-05-11 jprocterJAL-972 workaround for working out source URL for pre...
2012-05-11 jprocterformatting
2012-05-11 jprocterJAL-972 migration from dasobert to jdas registry URLs
2012-05-11 jprocterJAL-972 local do not have a coordsys element with sourc...
2012-05-11 jprocterJAL-424 TODO: new method signature for local source...
2012-05-10 jprocterJAL-1085 - ensure sequence fetching client waits around...
2012-05-10 jprocterJAL-972 JAL-1084 propagate reference to local authentic...
2012-05-10 jprocterJAL-1083 - graceful failover to single ID query mode...
2012-05-10 jprocterformatting
2012-05-10 jprocterJAL-1083 graceful failover to one ID per sequences...
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