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[jalview.git] / src / jalview / ws /
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into... tree | commitdiff
2017-11-13 Jim ProcterJAL-2758 remove configurable behaviour - Uniprot sequen... tree | commitdiff
2017-11-13 Jim ProcterJAL-2758 typo tree | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... tree | commitdiff
2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon... tree | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview tree | commitdiff
2017-10-06 Jim ProcterJAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... tree | commitdiff
2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https tree | commitdiff
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-09-01 gmungocJAL-2488 remove finalize methods tree | commitdiff
2017-08-22 Jim ProcterJAL-1551 formatting tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 canonicalise DB source before fetching to... tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 formatting tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-14 Jim ProcterJAL-2335 choose appropriate alphabet for filtering... tree | commitdiff
2017-08-14 Jim ProcterJAL-2335 source formatting tree | commitdiff
2017-08-14 Jim ProcterJAL-2335 filterNonStandardResidues configurable for... tree | commitdiff
2017-08-14 Jim ProcterJAL-2663 flag and filter to exclude non-standard amino... tree | commitdiff
2017-08-14 Jim ProcterJAL-2663 source formatting tree | commitdiff
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-09 Jim ProcterJAL-2426 Rfam download suffix tree | commitdiff
2017-08-09 Jim ProcterJAL-2426 JAL-1270 report Xfam download URL used if... tree | commitdiff
2017-08-09 Jim ProcterJAL-2425 raw stockholm download URLs tree | commitdiff
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method... tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to... tree | commitdiff
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... tree | commitdiff
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for... tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove... tree | commitdiff
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 tcofoegbuJAL-2482 bug fix tree | commitdiff
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-19 tcofoegbuJAL-2482 added null check tree | commitdiff
2017-04-18 tcofoegbuJAL-2482 Bugfix tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314 tree | commitdiff
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues tree | commitdiff
2017-03-23 kiramtJAL-2314 Tidies tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message tree | commitdiff
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... tree | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... tree | commitdiff
2017-02-18 gmungocJAL-2416 better encapsulated 'constants' for BLOSUM62... tree | commitdiff
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr... tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... tree | commitdiff
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-15 kiramtJAL-2316 Changes following review. tree | commitdiff
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop tree | commitdiff
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316 tree | commitdiff
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired tree | commitdiff
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download tree | commitdiff
2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor... tree | commitdiff
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI tree | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane tree | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile tree | commitdiff
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping tree | commitdiff
2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 updated method calls tree | commitdiff
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