Merge branch 'features/JAL-2446NCList' into features/JAL-2574findFeaturesByColumn
[jalview.git] / src / jalview / ws /
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message...
2016-07-26 tcofoegbuJAL-2157 bugfix for issues from enum refactoring
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-20 Jim ProcterJAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA...
2016-07-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker...
2016-07-18 gmungocfileFormat enum wip changes
2016-07-12 gmungocFileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-07-09 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... features/JAL-2110_crossRefDuplications
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser...
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-29 tcofoegbuJAL-1479 improved Sifts PID calculation for determining...
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-28 tcofoegbuJAL-1479 minor refactor and housekeeping
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme...
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications...
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into...
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker
2016-06-20 gmungocJAL-1667 updated PDB example query to a valid id (witho...
2016-06-20 Jim ProcterJAL-2110 List now used for AlignCodonFrame references
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
2016-06-14 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem...
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output...
2016-06-03 gmungocJAL-2110 random stuff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed...
2016-05-27 gmungocJAL-1911 correct typo in field name
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-05-23 gmungocJAL-2113 tidy variable naming / javadoc
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove...
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL...
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment
2016-04-26 Jim ProcterJAL-2079 disable RFAM(Full) source until we can retriev...
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature
2016-04-26 gmungocJAL-2068 deleting user-defined annotation removes the...
2016-04-25 tcofoegbudevelop merge
2016-04-22 gmungocJAL-2068 redundant implements clauses removed
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free...
2016-04-13 tcofoegbuJAL-2047 delay to allow table model initilisation to...
2016-04-06 tcofoegbumerge
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell...
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality...
2016-03-28 gmungocJAL-1705 Javadoc / debug output tweaks
2016-03-28 gmungocJAL-2016 push getFeatureColourScheme(source) into Seque...
2016-03-28 gmungocJAL-2036 update AlignFrame menus when dbreffetcher...
2016-03-24 tcofoegbuJAL-1479 Commented out debug sysout's for SiftsClient
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
2016-03-23 tcofoegbumerge
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2016-03-23 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-23 gmungocJAL-1997 default empty tooltip required for correct...
2016-03-22 tcofoegburesolve conflict with Mungo's merge
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2016-03-21 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support
2016-03-21 gmungocJAL-1855 dbfetch from /ena_sequence/, /ena_coding/
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering...
2016-03-21 tcofoegbudevelop merge
2016-03-16 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-10 tcofoegbudevelop merge
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual...
2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol
2016-03-03 tcofoegbuJAL-1919 updated unicode symbol for mapping
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according...
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage...
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2016-02-20 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues...
2016-02-12 gmungocJAL-1270 remove trailing space + test
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl...
2016-02-04 gmungocJAL-1705 temporary variable to aid inspection in debugger
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output...
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