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JAL-2416 allow space in score matrix name
[jalview.git] / src / jalview / ws /
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... tree | commitdiff
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef tree | commitdiff
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 disable RFAM(Full) source until we can retriev... tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature tree | commitdiff
2016-04-26 gmungocJAL-2068 deleting user-defined annotation removes the... tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-22 gmungocJAL-2068 redundant implements clauses removed tree | commitdiff
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... tree | commitdiff
2016-04-13 tcofoegbuJAL-2047 delay to allow table model initilisation to... tree | commitdiff
2016-04-06 tcofoegbumerge tree | commitdiff
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell... tree | commitdiff
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality... tree | commitdiff
2016-03-28 gmungocJAL-1705 Javadoc / debug output tweaks tree | commitdiff
2016-03-28 gmungocJAL-2016 push getFeatureColourScheme(source) into Seque... tree | commitdiff
2016-03-28 gmungocJAL-2036 update AlignFrame menus when dbreffetcher... tree | commitdiff
2016-03-24 tcofoegbuJAL-1479 Commented out debug sysout's for SiftsClient tree | commitdiff
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB tree | commitdiff
2016-03-23 tcofoegbumerge tree | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... tree | commitdiff
2016-03-23 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-23 gmungocJAL-1997 default empty tooltip required for correct... tree | commitdiff
2016-03-22 tcofoegburesolve conflict with Mungo's merge tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-21 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support tree | commitdiff
2016-03-21 gmungocJAL-1855 dbfetch from /ena_sequence/, /ena_coding/ tree | commitdiff
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings tree | commitdiff
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-03-16 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation tree | commitdiff
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop tree | commitdiff
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI tree | commitdiff
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter tree | commitdiff
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-10 tcofoegbudevelop merge tree | commitdiff
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual... tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode symbol for mapping tree | commitdiff
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according... tree | commitdiff
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage... tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-20 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues... tree | commitdiff
2016-02-12 gmungocJAL-1270 remove trailing space + test tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-04 gmungocJAL-1705 temporary variable to aid inspection in debugger tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe... tree | commitdiff
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring tree | commitdiff
2016-01-25 gmungocJAL-1997 database browser support tooltip if available tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 bugfix to check entire annotation... tree | commitdiff
2016-01-21 gmungocJAL-1705 redundant comment removed tree | commitdiff
2016-01-21 gmungocJAL-1705 unused import removed tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... tree | commitdiff
2016-01-21 gmungocJAL-1705 get xrefs only for dna/peptide; code tidy tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2016-01-05 gmungocJAL-653 typed map for feature colours in method signature tree | commitdiff
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings tree | commitdiff
2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS... tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference... tree | commitdiff
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi... tree | commitdiff
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS... tree | commitdiff
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping tree | commitdiff
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping tree | commitdiff
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor tree | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... tree | commitdiff
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing... tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB... tree | commitdiff
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