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JAl-1705 ENSEMBL cDNA type cannot be queried with peptide IDs
[jalview.git]
/
src
/
jalview
/
ws
/
2012-09-02
jprocter
JAL-1062 JAL-659 correct start position for retrieved...
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commitdiff
2012-09-02
jprocter
JAL-1062 use matching region or first section of sequen...
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commitdiff
2012-08-31
jprocter
Merge branch 'develop' into menard
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commitdiff
2012-08-31
jprocter
JAL-974 - ensure annotation created in local sequence...
tree
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commitdiff
2012-08-31
jprocter
JAL-1064 patch for NPE when registerd database names...
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commitdiff
2012-08-29
jprocter
JAL-974 skip empty rows
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commitdiff
2012-08-29
jprocter
JAL-974 set GlobPlot raw/smooth score annotation rows...
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commitdiff
2012-08-29
jprocter
JAL-1153 new runtime property set to first non-null...
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commitdiff
2012-08-28
jprocter
remove contaminant imports
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commitdiff
2012-08-28
jprocter
JAL-676 JAL-1001 - simple menu item to access documenta...
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commitdiff
2012-08-28
jprocter
formatting
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commitdiff
2012-08-28
jprocter
formatting
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commitdiff
2012-08-28
jprocter
JAL-974 create mixture of sequence features marking...
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commitdiff
2012-08-28
jprocter
JAL-974 refactored creation of Annotation rows from...
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commitdiff
2012-08-28
jprocter
JAL-974 JAL-975 try to cope with temporary server error...
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commitdiff
2012-08-28
jprocter
JAL-1001 - hack to extract the global URL for a service...
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commitdiff
2012-08-20
jprocter
JAL-1028 utilities package for accessing synchronous...
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commitdiff
2012-08-17
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-14
Anne Menard
last version stay many bugs ..
tree
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commitdiff
2012-08-07
jprocter
JAL-1137 clean up old-style menu code and look
tree
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commitdiff
2012-08-07
jprocter
JAL-1137 JAL-975 simpler menu for the AACon service...
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commitdiff
2012-08-07
jprocter
JAL-975 JAL-1137 debug messages for web service client...
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commitdiff
2012-08-03
jprocter
JAL-1136 allow parameter sets to be transferred across...
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commitdiff
2012-08-03
jprocter
JAL-1136 less code-dependent formula for creating serve...
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commitdiff
2012-08-03
jprocter
JAL-1136 - fix abstraction for parameter container...
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commitdiff
2012-08-02
jprocter
JAL-976 better logging/error reporting for disorder...
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commitdiff
2012-08-01
jprocter
JAL-976 don't clear menu out before adding jabaws servi...
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commitdiff
2012-07-16
Anne Menard
Last version
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commitdiff
2012-07-08
jprocter
JAL-976 clean out associated annotation
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commitdiff
2012-07-08
jprocter
JAL-976 implement additional calcId method
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commitdiff
2012-07-08
jprocter
JAL-976 simpler parameter update model
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commitdiff
2012-07-08
jprocter
JAL-961 JAL-976 allow access to service URI for paramet...
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commitdiff
2012-07-08
jprocter
JAL-961 JAL-976 recover current settings from associate...
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commitdiff
2012-07-08
jprocter
JAL-976 pick an available instance of a service based...
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commitdiff
2012-07-08
jprocter
bugfix - use currently held parameters
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commitdiff
2012-07-08
jprocter
JAL-976 - storing service parameters on the view model
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commitdiff
2012-07-06
jprocter
JAL-976 test if the sliders have been modified from...
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commitdiff
2012-07-06
jprocter
unique URI for service type
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commitdiff
2012-07-06
jprocter
JAL-961 JAL-976 abstracted container for dynamic calcul...
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commitdiff
2012-07-05
Anne Menard
Add support RNAML format
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commitdiff
2012-07-03
jprocter
JAL-961 allow calcId to be specified independently...
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commitdiff
2012-07-02
jprocter
JAL-974 create graduated feature colours for annotation...
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commitdiff
2012-06-20
jprocter
formatting
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commitdiff
2012-06-19
jprocter
JAL-976 JAL-975 JAL-1119 - pass on any existing paramet...
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commitdiff
2012-06-19
jprocter
JAL-975 JAL-1119 - prototype adjustable AACons paramete...
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commitdiff
2012-06-19
jprocter
JAL-975 - doh! valid result if width matches *ungapped...
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commitdiff
2012-06-19
jprocter
JAL-975 - bespoke AACons settings object to save curren...
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commitdiff
2012-06-19
jprocter
JAL-975 - ensure we only submit ungapped, padded alignm...
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commitdiff
2012-06-14
jprocter
JAL-975 JAL-1002 ensure custom parameters are actually...
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commitdiff
2012-06-14
jprocter
JAL-1115 - synchronized access to group list
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commitdiff
2012-06-14
jprocter
JAL-976 - make sure annotation panel is updated to...
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commitdiff
2012-06-14
jprocter
JAL-961 JAL-976 kill any existing AACon job if a new...
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commitdiff
2012-06-14
jprocter
JAL-1003 visual delay when running a sequence or alignm...
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commitdiff
2012-06-14
jprocter
JAL-961 JAL-976 tweaked way that AACons client is regis...
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commitdiff
2012-06-14
jprocter
formatting
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commitdiff
2012-06-14
jprocter
formatting
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commitdiff
2012-06-07
jprocter
JAL-976 ensure job id gets written out if there's an...
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commitdiff
2012-06-04
jprocter
javatidy
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commitdiff
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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commitdiff
2012-05-23
jprocter
TODO for JAL-976
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commitdiff
2012-05-23
jprocter
JAL-961 - annotatable datamodel objects can be queried...
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commitdiff
2012-05-14
jprocter
JAL-1095 - todo
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commitdiff
2012-05-14
jprocter
javadoc
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commitdiff
2012-05-11
jprocter
JAL-972 workaround for working out source URL for pre...
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commitdiff
2012-05-11
jprocter
formatting
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commitdiff
2012-05-11
jprocter
JAL-972 migration from dasobert to jdas registry URLs
tree
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commitdiff
2012-05-11
jprocter
JAL-972 local do not have a coordsys element with sourc...
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commitdiff
2012-05-11
jprocter
JAL-424 TODO: new method signature for local source...
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commitdiff
2012-05-10
jprocter
JAL-1085 - ensure sequence fetching client waits around...
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commitdiff
2012-05-10
jprocter
JAL-972 JAL-1084 propagate reference to local authentic...
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commitdiff
2012-05-10
jprocter
JAL-1083 - graceful failover to single ID query mode...
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commitdiff
2012-05-10
jprocter
formatting
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commitdiff
2012-05-10
jprocter
JAL-1083 graceful failover to one ID per sequences...
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commitdiff
2012-04-24
jprocter
JAL-1075, JAL-1061, JAL-1064 - introduced second tier...
tree
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commitdiff
2012-04-24
jprocter
JAL-1064 sequence database sources are stored and retri...
tree
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commitdiff
2012-04-24
jprocter
JAL-972 correct das registry default URL (JDAS automati...
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commitdiff
2012-04-24
jprocter
JAL-972 - test to distinguish sources based on age...
tree
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commitdiff
2012-04-24
jprocter
JAL-1074 fix - missing tag indicating alignments are...
tree
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commitdiff
2012-04-20
jprocter
JAL-972, JAL-1072 new default dasregistry.org registry...
tree
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commitdiff
2012-04-20
jprocter
JAL-1064 - refactor to iterate over many sources associ...
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commitdiff
2012-04-20
jprocter
JAL-972 - correct name when constructing db-source...
tree
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commitdiff
2012-03-30
jprocter
JAL-1062 - recognise and split off the range qualifier...
tree
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commitdiff
2012-03-30
jprocter
Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
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commitdiff
2012-03-30
jprocter
logic bug
tree
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commitdiff
2012-03-28
jprocter
JAL-1060 - record which services are invalid, valid...
tree
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commitdiff
2012-03-27
jprocter
(JAL-976) - consistent ordering of services according...
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commitdiff
2012-03-27
jprocter
JAL-976 - hack to provide consistent ordering of JABAWS...
tree
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commitdiff
2012-03-27
jprocter
(JAL-976) refactor JABAWS1 list
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commitdiff
2012-03-01
jprocter
Merge branch 'Release_2_7_Branch' into develop
tree
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commitdiff
2012-03-01
jprocter
debug local source management buttons and formatting
tree
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commitdiff
2012-03-01
jprocter
revised version of Jdas with simpler connectionProperty...
tree
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commitdiff
2012-02-29
jprocter
move from dasobert to jdas multithreaded feature fetchi...
tree
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commitdiff
2012-02-29
jprocter
refactoring dassequencesource code fallout
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commitdiff
2012-02-29
jprocter
refactored das sequence source creation code to the...
tree
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commitdiff
2012-02-29
jprocter
removed excess imports
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commitdiff
2012-02-29
jprocter
updated das sequence source for jdas client and refacto...
tree
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commitdiff
2012-02-29
jprocter
JAL-966 todo for jalview 3 api
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commitdiff
2012-02-29
jprocter
jalview das registry and source api and jdas specific...
tree
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commitdiff
2012-02-29
jprocter
jdas doesn't need a listener for das sequence retrieval...
tree
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commitdiff
2012-02-13
jprocter
remove dead imports
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commitdiff
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