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JAL-2316 Added GUI checks for duplicate link ids
[jalview.git]
/
src
/
jalview
/
2016-12-12
kiramt
JAL-2316 Added GUI checks for duplicate link ids
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 Unit test update to UrlLinkTableModel and...
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 Added jalview.urls.* packages
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 Missed change from previous checkin
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 More unit testing and adjustments
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 Unit tests
tree
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commitdiff
2016-12-09
kiramt
JAL-2316 Unit test updates and associated minor changes...
tree
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commitdiff
2016-12-09
kiramt
JAL-2316 Unit testing, relax constraint that default...
tree
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commitdiff
2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
tree
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commitdiff
2016-12-05
kiramt
JAL-2316 Added UrlProvider factories. Tidied up labelling.
tree
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commitdiff
2016-12-05
kiramt
JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
tree
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commitdiff
2016-12-02
kiramt
JAL-2316 GUI to allow to insert tokens into new URL...
tree
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commitdiff
2016-12-02
kiramt
JAL-2316 GUI updates to Connections tab in Preferences...
tree
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commitdiff
2016-11-18
kiramt
JAL-2316 First pass identifiers.org downloading working
tree
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commitdiff
2016-11-16
kiramt
JAL-2316 Setting up IdentifiersUrlProvider
tree
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commitdiff
2016-11-16
kiramt
JAL-2316 Added unit tests for CustomUrlProvider
tree
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commitdiff
2016-11-15
kiramt
JAL-2316 Moved url providers into own package
tree
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commitdiff
2016-11-15
kiramt
JAL-2316 Refactoring of functionality to provide urls...
tree
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commitdiff
2016-11-14
kiramt
Url links changes - incomplete checkin as battery low
tree
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commitdiff
2016-11-10
tcofoegbu
Merge branch 'develop' into bug/JAL-2317_jmol_chimera...
tree
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commitdiff
2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
tree
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commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservati...
tree
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commitdiff
2016-11-08
tcofoegbu
JAL-2292 updated method calls
tree
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commitdiff
2016-11-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-11-08
tcofoegbu
JAL-2292 renamed method and improved implementation...
tree
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commitdiff
2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
tree
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commitdiff
2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
tree
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commitdiff
2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
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commitdiff
2016-11-04
kiramt
JAL-2315 Clear sequenceURLLinks if all sequence links...
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 added javadoc for compareChar(..) utility...
tree
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commitdiff
2016-11-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2195 JAL-2262 house keeping
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 fix for wrong mapping output in sequence mappi...
tree
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commitdiff
2016-11-04
tcofoegbu
JAL-2292 Wrote utility method for comparing two char...
tree
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commitdiff
2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
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commitdiff
2016-11-04
kiramt
JAL-2282 Better check for existing url links
tree
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commitdiff
2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
tree
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commitdiff
2016-11-04
kiramt
JAL-2282 Remove Cache dependency from applet
tree
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commitdiff
2016-11-04
kiramt
JAL-2282 Message box stays on top at Jalview open;...
tree
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commitdiff
2016-11-03
kiramt
JAL-2282 Link menu disabled if there are no valid links
tree
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commitdiff
2016-11-03
kiramt
JAL-2282 If checkbox on warning dialog is unclicked...
tree
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commitdiff
2016-11-03
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-11-03
tcofoegbu
JAL-2312 Bug fix for repeated mapping generation from...
tree
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commitdiff
2016-11-02
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
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commitdiff
2016-11-02
kiramt
JAL-2281 Use DBRefs.selectRefs to uppercase URL link...
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 Refactor applet too
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 wording "negatively conserved" now "absence...
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 Code tidy
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 Renamed internal use of sequence id / db acces...
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 URLLink unit tests updated
tree
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commitdiff
2016-11-01
gmungoc
Conservation now using ResidueCount; tests added
tree
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commitdiff
2016-11-01
gmungoc
JAL-98 use Integer constants; tests added for propHash...
tree
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commitdiff
2016-11-01
gmungoc
JAL-98 typo in javadoc
tree
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commitdiff
2016-11-01
gmungoc
JAL-98 simplified repeat() method
tree
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commitdiff
2016-11-01
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-11-01
tcofoegbu
JAL-2280 refactored and improved structure file identif...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Refactor SequenceAnnotationReport to use refac...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Changed DB accession id token to $DB_ACCESSION...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Refactored URL link creation into UrlLink
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Removed unexpected ; from code
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Force double-clicking to use sequence_id cases...
tree
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commitdiff
2016-10-31
gmungoc
JAL-98 round when formatting dec places
tree
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commitdiff
2016-10-31
kiramt
Force double-clicking to use sequence_id cases and...
tree
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commitdiff
2016-10-31
kiramt
Use ACCESSION_ID for database accession id, and SEQUENC...
tree
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commitdiff
2016-10-27
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-10-27
tcofoegbu
JAL-2280 Improvement to enable drag'n'drop association...
tree
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commitdiff
2016-10-27
gmungoc
JAL-98 refactor bleachColour() to ColorUtils
tree
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commitdiff
2016-10-27
gmungoc
JAL-2287 treat Escape like Cancel in dialog box
tree
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commitdiff
2016-10-26
gmungoc
JAL-2287 Cancel option on Close Chimera? dialog
tree
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commitdiff
2016-10-26
gmungoc
Merge branch 'bug/JAL-98consensusMemory' into develop
tree
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commitdiff
2016-10-26
gmungoc
JAL-2286 modal residue check + commenting
tree
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commitdiff
2016-10-26
gmungoc
JAL-98 null reference to globalColourScheme as it has...
tree
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commitdiff
2016-10-26
gmungoc
JAL-2286 javadoc, refactor, unit tests for threshold...
tree
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commitdiff
2016-10-26
tcofoegbu
Merge branch 'features/JAL-2284_export-biojsmsa-via...
tree
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commitdiff
2016-10-26
tcofoegbu
JAL-2284 basic support for exporting BioJS MSA viewer...
features/JAL-2284_export-biojsmsa-via-cli
tree
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commitdiff
2016-10-25
gmungoc
JAL-2286 use constant for fixed colours
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 javadoc corrected
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 javadoc added
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 minor fixes to / tests for annotation derivation
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-25
tcofoegbu
Merge branch 'bug/JAL-2277_html-output-wrapped-mode...
tree
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commitdiff
2016-10-25
tcofoegbu
JAL-2277 Improvement to support html+svg export in...
bug/JAL-2277_html-output-wrapped-mode
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 field comments updated
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 small efficiency fix + commenting
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 javadoc / comments updated
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-24
gmungoc
JAL-98 fixme comment removed - nothing to do
tree
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commitdiff
2016-10-24
gmungoc
JAL-98 ResidueCount 100% test coverage (and bug fixes!)
tree
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commitdiff
2016-10-24
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-10-24
kiramt
Unit tests for UrlLink
bug/JAL-2281JAL-2282
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'bug/JAL-2272cmdClickGroupEdit' into develop
tree
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commitdiff
2016-10-24
gmungoc
JAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl...
bug/JAL-2272cmdClickGroupEdit
tree
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commitdiff
2016-10-24
kiramt
Fixed dialog box messages in English and Spanish. Adjus...
tree
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commitdiff
2016-10-24
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-24
kiramt
Correct Preferences to check for SEQUENCE_NAME as well...
tree
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commitdiff
2016-10-24
gmungoc
JAL-2283 set 'by conservation' correctly when changing...
tree
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commitdiff
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