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[jalview.git]
/
src
/
jalview
/
2005-09-22
amwaterhouse
isNucleotide
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commitdiff
2005-09-22
amwaterhouse
Create instance of FormatAdapter
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commitdiff
2005-09-22
amwaterhouse
Add nucleotide names
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commitdiff
2005-09-22
amwaterhouse
Display nucleotides
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commitdiff
2005-09-22
amwaterhouse
Break if regex not found
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commitdiff
2005-09-22
amwaterhouse
If Mac user hasnt selected file format, give warning
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commitdiff
2005-09-22
amwaterhouse
Wrap alignment with annotations
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commitdiff
2005-09-22
amwaterhouse
Check if filefilter is null
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commitdiff
2005-09-21
amwaterhouse
Jalview
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commitdiff
2005-09-21
amwaterhouse
Sequences must be aligned before PCA
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commitdiff
2005-09-21
amwaterhouse
Next active Frame losing focus bug fixed
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commitdiff
2005-09-20
amwaterhouse
Checks end of sequence before drawing text
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commitdiff
2005-09-20
amwaterhouse
Format label left align
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commitdiff
2005-09-20
amwaterhouse
Optimise copy image
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commitdiff
2005-09-20
amwaterhouse
PCAPanel checks viewport selection group
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commitdiff
2005-09-20
amwaterhouse
PCAPanel checks viewport selection
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commitdiff
2005-09-20
amwaterhouse
PCAPanel just requires viewport
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commitdiff
2005-09-20
amwaterhouse
Help gets bounds from help map file
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commitdiff
2005-09-20
amwaterhouse
New methods in treePanel
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commitdiff
2005-09-20
amwaterhouse
Null pointer if user presses shift before anything...
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commitdiff
2005-09-20
amwaterhouse
Align labels format left
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commitdiff
2005-09-20
amwaterhouse
Optimise graphics copy object
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commitdiff
2005-09-20
amwaterhouse
Use selectionGroup to find chosen sequences
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commitdiff
2005-09-20
amwaterhouse
Make sure fontmetrics is not null
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commitdiff
2005-09-19
amwaterhouse
Make sure fontmetrics exists for headless state
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commitdiff
2005-09-19
amwaterhouse
Dont add ServiceListeners if desktop is null
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commitdiff
2005-09-19
amwaterhouse
Alignment of node labels modified
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commitdiff
2005-09-19
amwaterhouse
ShowDistances, placeHolders and bootstraps have their...
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commitdiff
2005-09-16
amwaterhouse
Check image is not null in fast paint
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commitdiff
2005-09-16
amwaterhouse
Set distanceMenu selected true
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commitdiff
2005-09-15
jprocter
Fixed so job submission and job failure errors are...
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commitdiff
2005-09-15
amwaterhouse
Add Uracil as X unknown
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commitdiff
2005-09-15
amwaterhouse
OptionPane warning for out of memory
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commitdiff
2005-09-15
amwaterhouse
remove system.out
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commitdiff
2005-09-15
amwaterhouse
Remove key listener
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commitdiff
2005-09-15
amwaterhouse
Use equalsIgnoreCase
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commitdiff
2005-09-15
amwaterhouse
Applet has main method, excutable
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commitdiff
2005-09-15
amwaterhouse
Logger moved to prefs so that class not found error...
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commitdiff
2005-09-14
amwaterhouse
Move bootStrap/distance settings outside thread
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commitdiff
2005-09-14
amwaterhouse
Add end of consensus test for wrapped edit
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commitdiff
2005-09-14
amwaterhouse
fullSeqId should follow preference value
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commitdiff
2005-09-14
amwaterhouse
Make new frame selected
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commitdiff
2005-09-14
amwaterhouse
Remove system out tests
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commitdiff
2005-09-14
amwaterhouse
Copy and paste uses FASTA format
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commitdiff
2005-09-14
amwaterhouse
Call methods in treeCanvas on init
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commitdiff
2005-09-14
amwaterhouse
offy changes
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commitdiff
2005-09-14
amwaterhouse
OutOfMemory try catch
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commitdiff
2005-09-14
amwaterhouse
Use font size, not font height
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commitdiff
2005-09-14
amwaterhouse
Resize for mac
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commitdiff
2005-09-14
amwaterhouse
Use getTreeFont instead of getFont
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commitdiff
2005-09-14
amwaterhouse
Font change instead of font size
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commitdiff
2005-09-14
amwaterhouse
Add Export tab
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commitdiff
2005-09-14
amwaterhouse
Make button protected
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commitdiff
2005-09-14
amwaterhouse
use fontchooser to change fonts
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commitdiff
2005-09-14
amwaterhouse
Center labels
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commitdiff
2005-09-14
amwaterhouse
Save fonts for trees
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commitdiff
2005-09-14
amwaterhouse
Change fonts in Treepanel
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commitdiff
2005-09-14
amwaterhouse
Add header
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commitdiff
2005-09-14
amwaterhouse
System.gc after outofmemory
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commitdiff
2005-09-14
amwaterhouse
PCA is in outofmemory try-catch
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commitdiff
2005-09-14
amwaterhouse
TreeFont added, binding rebuilt
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commitdiff
2005-09-13
amwaterhouse
Dont respond to mouse movements if alignment wrapped
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commitdiff
2005-09-13
amwaterhouse
Give focus to textarea on startup
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commitdiff
2005-09-13
amwaterhouse
EPSOptions added
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commitdiff
2005-09-13
amwaterhouse
Warn if out of memory
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commitdiff
2005-09-12
amwaterhouse
Remove gaps in regions, not char by char
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commitdiff
2005-09-12
amwaterhouse
Always return true for directories
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commitdiff
2005-09-12
amwaterhouse
null pointers removed
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commitdiff
2005-09-12
amwaterhouse
Null pointers removed
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commitdiff
2005-09-12
amwaterhouse
Dont fastpaint if movement is zero
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commitdiff
2005-09-12
amwaterhouse
Update overview after change
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commitdiff
2005-09-12
amwaterhouse
Update overview in alignmentChanged
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commitdiff
2005-09-12
amwaterhouse
Size checking in drawGraph
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commitdiff
2005-09-12
amwaterhouse
Overview subsamples alignment
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commitdiff
2005-09-08
amwaterhouse
Move tree property change to treePanel
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commitdiff
2005-09-08
amwaterhouse
Only 1 NJtree
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commitdiff
2005-09-08
amwaterhouse
TreePanel takes viewport
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commitdiff
2005-09-08
amwaterhouse
REmove unnecessary imports
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commitdiff
2005-09-08
amwaterhouse
Init PCA in thread
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commitdiff
2005-09-08
amwaterhouse
If no consensus, disable certain colour options
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commitdiff
2005-09-08
amwaterhouse
update consensus and conservation are in try catch...
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commitdiff
2005-09-08
amwaterhouse
Optimise switch to fastPaint
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commitdiff
2005-09-08
amwaterhouse
Correct mouse pressed bug
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commitdiff
2005-09-08
amwaterhouse
Optimised for wide alignments
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commitdiff
2005-09-08
amwaterhouse
Load in a thread
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commitdiff
2005-09-08
amwaterhouse
Make menuitems protected
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commitdiff
2005-09-08
amwaterhouse
If vconsensus is null, return
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commitdiff
2005-09-08
amwaterhouse
Add lowercase nucleotides to nucleotideHash
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commitdiff
2005-09-05
jprocter
More informative error messages.
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commitdiff
2005-09-02
amwaterhouse
Applet search by residue index fixed
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commitdiff
2005-09-01
amwaterhouse
Add header to file
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commitdiff
2005-09-01
amwaterhouse
firePropertyChange if sequences deleted
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commitdiff
2005-09-01
amwaterhouse
Need reference to mainApplet
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commitdiff
2005-09-01
amwaterhouse
Use propertyListener for alignment edits
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commitdiff
2005-09-01
amwaterhouse
Sort by added to preferences
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commitdiff
2005-09-01
amwaterhouse
No need to recalculate image for font change
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commitdiff
2005-08-31
amwaterhouse
Repaint scale panel after unselect all
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commitdiff
2005-08-31
amwaterhouse
Must update globalColourScheme with new consensus
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commitdiff
2005-08-30
amwaterhouse
UserColour gui modified
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commitdiff
2005-08-30
amwaterhouse
Make 24 colours to be sure
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commitdiff
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