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JAL-1544 "more than" not "more that"
[jalview.git]
/
src
/
jalview
/
2016-01-07
tcofoegbu
merge
tree
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commitdiff
2016-01-07
tcofoegbu
JAL-1479 implemented timestamp based caching of SIFTS...
tree
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commitdiff
2015-12-09
Jim Procter
JAL-1982 hotfix to prevent NPE with applet launch on...
tree
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commitdiff
2015-12-03
gmungoc
JAL-1827 code and comment tidy up
tree
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commitdiff
2015-12-02
gmungoc
JAL-1827 refactored to handle missing residues better
tree
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commitdiff
2015-12-02
gmungoc
JAL-1827 added overloaded method for convenience
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 refactored DBRef fetching code to StructureCho...
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 applet build debug
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 bugfix after decoupling SIFTS preference settings
tree
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commitdiff
2015-11-23
tcofoegbu
JAL-1479 commented out DBRef fetching code from SIFTS...
tree
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commitdiff
2015-11-17
tcofoegbu
JAL-1479 Refactored Sifts configuration preference...
tree
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commitdiff
2015-11-16
tcofoegbu
JAL-1967 JAL-1479 refactored sequence<->structure mappi...
tree
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commitdiff
2015-11-13
tcofoegbu
JAL-1479 added transfer of residue annotation for SIFTS...
tree
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commitdiff
2015-11-11
tcofoegbu
JAL-1479 JAL-1957 Added code to enable simultaneous...
tree
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commitdiff
2015-11-11
tcofoegbu
merge
tree
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commitdiff
2015-11-11
tcofoegbu
JAL-1957 JAL-1479 Further optimisation of SIFTs Client...
features/JAL-1479_SIFTS-mapping
tree
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commitdiff
2015-11-10
tcofoegbu
JAL 1960 added code to restrict structure chooser to...
tree
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commitdiff
2015-11-05
tcofoegbu
JAL-1479 SiftClient house keeping
tree
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commitdiff
2015-11-05
tcofoegbu
JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
tree
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commitdiff
2015-11-02
tcofoegbu
JAL-1955 Uniprot sequence fetcher refactor
tree
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commitdiff
2015-10-30
Jim Procter
JAL-1954 rejigged PFAMFile to split on ‘\t’ if no space...
tree
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commitdiff
2015-10-29
tcofoegbu
JAL-1926 JAL-1479 updated PDBfile fetcher to add source...
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1479 added support for SIFTs mapping output viewing...
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1952 bugfix
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1887 JAL-1479 bugfix for incorrect start/end for...
tree
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commitdiff
2015-10-23
gmungoc
JAL-1943 don't try to unmarshal non-xml files in V1...
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1479 added basic support for SIFTs mapping - more...
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1479 implemented preferences for SIFTs / Needleman...
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1942 JAL-1479 DBRefFetcher refactor
tree
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commitdiff
2015-10-22
gmungoc
JAL-1932 TrimRegionCommand bug fix, tests and purge...
tree
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commitdiff
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 formatting
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 add groups to codon-complement and notify...
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 fix: don’t add group twice
tree
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commitdiff
2015-10-14
tcofoegbu
JAL-1926 created interface for DBRefEntry
tree
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commitdiff
2015-10-14
tcofoegbu
JAL-1926 added supporting model changes to enable savin...
tree
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commitdiff
2015-10-13
tcofoegbu
JAL-1479 added SIFTS XSD and generated JAXB bindings...
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 add licensing
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 organise imports
tree
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commitdiff
2015-10-08
tcofoegbu
merge
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1894 source formatting
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1894 organise imports
tree
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commitdiff
2015-10-07
tcofoegbu
JAL-1912 added documentation
features/JAL-1912_biojson-per-sequence-annotation
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1912 formatting
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1912 javadoc for adjustForAlignment stating current...
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1912 efficiency: look up sequenceMapping once per...
tree
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commitdiff
2015-10-07
Jim Procter
Merge branch 'features/JAL-1912_biojson-per-sequence...
tree
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commitdiff
2015-10-05
tcofoegbu
JAL-1912 house keeping
tree
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commitdiff
2015-10-05
tcofoegbu
JAL-1912 added null check for SequenceMapping variable...
tree
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commitdiff
2015-10-05
gmungoc
JAL-1812 set/return currentAlFrame for Groovy in headle...
tree
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into features/JAL-1912_biojson...
tree
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commitdiff
2015-10-05
gmungoc
JAL-1684 JAL-1452 new applet parameters defaultColourNuc
tree
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commitdiff
2015-10-05
tcofoegbu
JAL-1908 bugfix
tree
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commitdiff
2015-10-05
tcofoegbu
JAL-1912 updated AnnotationDisplaySettingPojo
tree
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commitdiff
2015-10-02
gmungoc
JAL-1815 restore split frame geometry including horizon...
tree
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commitdiff
2015-10-02
Jim Procter
JAL-1900 JAL-1625 disable iconify button for internal...
tree
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commitdiff
2015-10-01
tcofoegbu
JAL-1912 Double.NaN breaks JSON serialization - added...
tree
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commitdiff
2015-10-01
tcofoegbu
JAL-1912 refactor annotation refsequence assignemnt...
tree
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commitdiff
2015-09-30
tcofoegbu
house keeping
tree
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commitdiff
2015-09-30
tcofoegbu
JAL-1860 house keeping
tree
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commitdiff
2015-09-30
tcofoegbu
JAL-1852 made disabling querying of unpublished PDB...
tree
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commitdiff
2015-09-30
tcofoegbu
JAL-1912 added support of tcoffee annotation and other...
tree
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commitdiff
2015-09-30
tcofoegbu
JAL-1852 disable querying of unpublished PDB entries...
tree
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commitdiff
2015-09-29
tcofoegbu
JAL-1896 fixed NPE for RNA Helice without equivalent...
tree
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commitdiff
2015-09-28
tcofoegbu
merge
tree
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commitdiff
2015-09-28
tcofoegbu
JAL-1896 revised implementation to construct a ColourSc...
tree
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commitdiff
2015-09-28
gmungoc
JAL-1909 repaint complementary alignment panel after...
tree
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commitdiff
2015-09-25
gmungoc
JAL-1859 try hoverDelay of 0.1s in Jmol for more respon...
tree
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commitdiff
2015-09-25
tcofoegbu
merge
tree
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commitdiff
2015-09-25
tcofoegbu
JAL-1907 bugfix for NPE while parsing a features file
tree
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commitdiff
2015-09-25
gmungoc
JAL-1815 restore split frame geometry correctly includi...
tree
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commitdiff
2015-09-25
tcofoegbu
merge
tree
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commitdiff
2015-09-25
tcofoegbu
JAL-1860 disabled default enter behaviour on pdb search...
tree
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commitdiff
2015-09-24
gmungoc
JAL-1905 parse url including & correctly
tree
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commitdiff
2015-09-24
gmungoc
JAL-1904 parse feature file colours on to alignment...
tree
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commitdiff
2015-09-24
tcofoegbu
JAL-1860 only allow enter key when valid selection...
tree
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commitdiff
2015-09-24
tcofoegbu
JAL-1860 keyboard operation of pdb sequence fetcher...
tree
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commitdiff
2015-09-24
tcofoegbu
JAL-1896 bugfix to enabled Jalview restore clustal...
tree
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commitdiff
2015-09-22
tcofoegbu
JAL-1774 house keeping
tree
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commitdiff
2015-09-21
tcofoegbu
merge
tree
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commitdiff
2015-09-21
tcofoegbu
JAL-1774 modifed warning dialog to use JVDialog rather...
tree
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commitdiff
2015-09-21
gmungoc
JAL-1799 update height of annotation labels to match...
tree
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commitdiff
2015-09-21
gmungoc
JAL-1152 set initial state of show alignment/sequence...
tree
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commitdiff
2015-09-18
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-09-18
Jim Procter
JAL-1889 remove non-UTF8 characters so we can build...
tree
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commitdiff
2015-09-18
tcofoegbu
JAL-1774 JAL-1506 revised implementaion for clear highl...
tree
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commitdiff
2015-09-18
tcofoegbu
JAL-1506 revised implementation to clear only selected...
tree
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commitdiff
2015-09-18
gmungoc
JAL-1859 reinstated full path to file option (for local...
tree
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commitdiff
2015-09-17
tcofoegbu
JAL-1774 bugfix for misleading message after trying...
tree
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commitdiff
2015-09-16
tcofoegbu
merge
tree
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commitdiff
2015-09-16
tcofoegbu
JAL-1486 off-by-one error bugfix
tree
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commitdiff
2015-09-16
gmungoc
JAL-1882 variable renamed to avoid confusion with membe...
tree
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commitdiff
2015-09-16
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-09-16
gmungoc
JAL-1885 small fix to isVersionStringLaterThan plus...
tree
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commitdiff
2015-09-16
tcofoegbu
merge
tree
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commitdiff
2015-09-16
tcofoegbu
JAL-1881 Bugfix for annotation import from BioJS
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 refactor duplicated code to new HttpUtils...
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 code tidy, remove 'absolute URL' option
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 debug logging removed
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 revert to resolving full path to PDB file
tree
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commitdiff
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