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[jalview.git] / src / jalview /
2017-10-06 kiramtJAL-2647 stashing tree | commitdiff
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response tree | commitdiff
2017-10-05 kiramtJAL-2674 Removed a stray Vector tree | commitdiff
2017-10-05 gmungocJAL-2738 update spikes/mungo tree | commitdiff
2017-10-05 kiramtJAL-2674 Rationalising iterators and retesting tree | commitdiff
2017-10-05 gmungocJAL-2738 warn (in console) when non chromosomal coordin... tree | commitdiff
2017-10-05 gmungocJAL-2738 helper method for convolving mappings tree | commitdiff
2017-10-05 gmungocJAL-2755 transfer chromosomal reference from transcript... tree | commitdiff
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two... tree | commitdiff
2017-10-05 gmungocJAL-2744 add score to feature details report, descripti... tree | commitdiff
2017-10-04 kiramtJAL-2674 Adjustments to hideColumns tree | commitdiff
2017-10-04 gmungocJAL-2738 fix bug of premature exit from adding attributes tree | commitdiff
2017-10-04 gmungocJAL-2523 start of refactoring... tree | commitdiff
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence tree | commitdiff
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence tree | commitdiff
2017-10-04 gmungocJAL-2738 match consequence "Allele" to VCF allele;... tree | commitdiff
2017-10-04 gmungocJAL-2744 handle null features list tree | commitdiff
2017-10-04 kiramtJAL-2674 tidy tree | commitdiff
2017-10-03 kiramtJAL-2674 testing tree | commitdiff
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-10-03 gmungocJAL-2738 code formatting tree | commitdiff
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing... tree | commitdiff
2017-10-02 gmungocJAL-2738 code tidy up, null checks &c tree | commitdiff
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology tree | commitdiff
2017-10-02 gmungocJAL-2738 filter VEP consequence data to that for curren... tree | commitdiff
2017-10-02 kiramtJAL-2674 iterator for visible blocks with absolute... tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 gmungocJAL-2738 one sequence feature per (SNP) VCF allele tree | commitdiff
2017-09-29 gmungocJAL-2744 indent CSQ lines to catch the eye tree | commitdiff
2017-09-29 kiramtJAL-2674 Tidies tree | commitdiff
2017-09-29 kiramtJAL-2674 finish with iterators for now tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy tree | commitdiff
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... tree | commitdiff
2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https tree | commitdiff
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https tree | commitdiff
2017-09-28 gmungocJAL-2738 separate thread to load VCF; update FeatureSet... tree | commitdiff
2017-09-28 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-09-28 kiramtJAL-2647 more iterators tree | commitdiff
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame tree | commitdiff
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry tree | commitdiff
2017-09-28 gmungocJAL-2744 simple Feature Details report from Popup menu tree | commitdiff
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin... tree | commitdiff
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy tree | commitdiff
2017-09-26 kiramtJAL-2674 tidied up CigarArray tree | commitdiff
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'... tree | commitdiff
2017-09-26 kiramtJAL-2742 fixed tree | commitdiff
2017-09-26 kiramtJAL-2674 Changed CigarArray constructor to use HiddenCo... tree | commitdiff
2017-09-26 kiramtJAL-2674 more List<int[]> -> HiddenColumns copy changes tree | commitdiff
2017-09-26 kiramtJAL-2674 Changes to pasting tree | commitdiff
2017-09-26 gmungocJAL-2738 transfer VCF variant features to CDS sequences tree | commitdiff
2017-09-26 gmungocJAL-2738 JAL-2154 add DBRef from transcript to synthesi... tree | commitdiff
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2740'... tree | commitdiff
2017-09-26 kiramtJAL-2740 removed unwanted code, added unit test tree | commitdiff
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies tree | commitdiff
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench... tree | commitdiff
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene tree | commitdiff
2017-09-26 gmungocJAL-2738 promote setGeneLoci to SequenceI! tree | commitdiff
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... tree | commitdiff
2017-09-25 gmungocJAL-2738 getGeneLoci promoted to SequenceI tree | commitdiff
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... tree | commitdiff
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader tree | commitdiff
2017-09-25 gmungocJAL-2738 one constant in codebase for "alleles" attribu... tree | commitdiff
2017-09-25 gmungocJAL-2738 extract SNP variants from SNP or MIXED variant... tree | commitdiff
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils tree | commitdiff
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes tree | commitdiff
2017-09-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2739'... tree | commitdiff
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3 tree | commitdiff
2017-09-22 gmungocJAL-2738 lookup GRCh38/37 gene mapping tree | commitdiff
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions tree | commitdiff
2017-09-21 kiramtJAL-2674 Made gui ScalePanel reveal menus consistent... tree | commitdiff
2017-09-21 gmungocJAL-2738 compute VCF on peptide, extract AF (allele... tree | commitdiff
2017-09-21 gmungocJAL-2738 add chromosome coordinate mappings to transcripts tree | commitdiff
2017-09-21 kiramtJAL-2674 Rewrote propagateInsertions tree | commitdiff
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence tree | commitdiff
2017-09-21 gmungocJAL-2738 GeneLoci holds mapping of sequence to chromosome tree | commitdiff
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence tree | commitdiff
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple... tree | commitdiff
2017-09-18 gmungocMerge remote-tracking branch 'origin/patch/JAL-2732... tree | commitdiff
2017-09-18 gmungocJAL-2728 fine tuned initial split of split frame view tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732 tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 javadoc tree | commitdiff
2017-09-15 Jim ProcterJAL-2733 redraw after changing the memory status displa... tree | commitdiff
2017-09-15 Jim ProcterJAL-1625 JAL-1900 preserve the original DesktopManager... tree | commitdiff
2017-09-15 Jim ProcterJAL-1900 JAL-1625 back out OSX specific double buffer... tree | commitdiff
2017-09-15 Jim ProcterJAL-1551 standard code formatting tree | commitdiff
2017-09-15 Jim ProcterJAL-2732 force a redraw after resize/drag to clear... tree | commitdiff
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