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JAL-4241 Create sequence mapping before adjusting annotations
[jalview.git]
/
src
/
jalview
/
2022-04-26
Mateusz Warowny
JAL-3878 Implement RNA Sec. Str. Pred. discovery for...
JAL-3878_ws-overhaul-3
tree
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commitdiff
2022-04-25
Mateusz Warowny
JAL-3878 log full worker repr in AlignCalcManager
tree
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commitdiff
2022-04-25
Mateusz Warowny
JAL-3878 Fix edit settings dialog prompting to discard...
tree
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commitdiff
2022-04-21
Ben Soares
Merge branch 'develop' into merge/JAL-3978+JAL-3553...
tree
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commitdiff
2022-04-21
Ben Soares
Merge branch 'develop' into task/JAL-3991_check_actual_...
tree
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commitdiff
2022-04-19
Jim Procter
Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into...
tree
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commitdiff
2022-04-18
Jim Procter
JAL-3997 check for tooltip being null before checking...
bug/JAL-3997_NPE_in_wrapped_mode
tree
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commitdiff
2022-04-16
Jim Procter
JAL-3365 expand range of allowed DSSP secondary structu...
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Use slivka client's URL when building web...
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Add conservation service discovery
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Build interactive services menu
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Implement prot. seq. an. discovery for slivka.
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Implement gui elements for annotation servicces
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Create SlivkaAnnotationWSClient
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Add full name getter to ActionI
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Log status changes in annotation task
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Allow null value for action name
tree
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commitdiff
2022-04-07
Mateusz Warowny
JAL-3878 Add action and task for annotation services
tree
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commitdiff
2022-04-06
Ben Soares
JAL-3991 Made info displayed only when needed (Java...
tree
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commitdiff
2022-04-06
Ben Soares
JAL-3991 Added information output about the slightly...
tree
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commitdiff
2022-04-06
Ben Soares
JAL-3991 JAVA_COMPILE_VERSION put into build_properties...
tree
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commitdiff
2022-04-05
Jim Procter
JAL-3981 patch tests and remove errant imports
tree
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commitdiff
2022-04-05
Jim Procter
JAL-3990 gradle spotlessApply
tree
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commitdiff
2022-04-05
Jim Procter
Merge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d...
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Introduce IProgressIndicator#addProgressBar
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Fix method name to fireTaskRestarted
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Add char[] constructor to Sequence
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Make BaseJob setters public so they can be...
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Add fullName to BaseAction class which combine...
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Move status precedence list to JobStatus class
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Add uid to WS Tasks
tree
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commitdiff
2022-03-31
Ben Soares
Merge branch 'develop' into improvement/JAL-3978_add_gr...
tree
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commitdiff
2022-03-31
Jim Procter
JAL-3985 formatting
tree
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commitdiff
2022-03-31
Jim Procter
JAL-3985 split PDB id queries into multiple queries...
tree
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commitdiff
2022-03-30
Jim Procter
Merge branch 'patch/JAL-3976_3dbeaconsnull' into develop
tree
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commitdiff
2022-03-30
Jim Procter
JAL-360 JAL-3975 update parent for text colour dialog...
tree
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commitdiff
2022-03-30
Ben Soares
JAL-360 JAL-3975 make AlignFrame the parent of FeatureE...
tree
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commitdiff
2022-03-28
Mateusz Warowny
JAL-3878 Patch preferences window to use new discoverer.
tree
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commitdiff
2022-03-28
Mateusz Warowny
JAL-3878 Fix discoverer being stuck on BEGIN state...
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Add slivka discoverer and menu to AlignFrame
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Change align frame added to desktop to correct one
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Wrap infoPanel updates with SwingUtilities...
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Fix re-alignment-capable services detection.
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Clear services list on reload.
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Fix task status precedence calculation
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Fix NullPointerExceptions caused by nulls...
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL3878 Implement slivka service discoverer
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Move action name initialization to its own...
tree
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commitdiff
2022-03-25
Jim Procter
JAL-3980 JAL-3979 TODOs
bug/JAL-3980_JAL-3981_tooltips_sequence_details
tree
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commitdiff
2022-03-25
Jim Procter
JAL-3980 defensive copy - inefficient but fixes bug
tree
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commitdiff
2022-03-25
Jim Procter
JAL-3981 Additional line breaks - sort of helps
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Create ws2 client for slivka services
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Add builders to each service parameter class
tree
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commitdiff
2022-03-24
Jim Procter
JAL-3981 strategic newlines to help speed up Java's...
tree
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commitdiff
2022-03-24
Mateusz Warowny
JAL-3878 Create service agnostic param datastore and set
tree
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commitdiff
2022-03-23
Mateusz Warowny
JAL-3878 Create beans for un/marshalling service parameters
tree
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commitdiff
2022-03-23
Jim Procter
JAL-3976 skip entries with null values when analyzing
tree
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commitdiff
2022-03-18
Ben Soares
JAL-3978 Using getdowninstanceappdir and getdowninstanc...
tree
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commitdiff
2022-03-18
Ben Soares
JAL-3978 New tasks to build archive 'old' dir with...
tree
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commitdiff
2022-03-18
Mateusz Warowny
JAL-3878 Create abstract ws discoverer providing common...
tree
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commitdiff
2022-03-15
Mateusz Warowny
JAL-3878 Connect alignment services with gui
tree
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commitdiff
2022-03-14
Mateusz Warowny
JAL-3878 Move array index search to ArrayUtils
tree
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commitdiff
2022-03-11
Mateusz Warowny
JAL-3878 Create web service menu manager.
tree
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commitdiff
2022-03-11
Mateusz Warowny
JAL-3878 Add hasPresets and hasParameters utility metho...
tree
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commitdiff
2022-03-09
Mateusz Warowny
JAL-3878 Add WebServiceProviderI - a view of services.
tree
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commitdiff
2022-03-09
Mateusz Warowny
JAL-3878 Improve performance of gap sequence construction.
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to source
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3108 updated Ensembl client and model species names
tree
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commitdiff
2022-03-08
Mateusz Warowny
JAL-3878 Add web service reference to actions.
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Removed code and unused widgets for defaultBrowser
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Put jalview.jar first in getdown for .properti...
tree
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commitdiff
2022-03-07
Ben Soares
JAL-3103 Switched to (a wrapper around) BrowserLauncher2
tree
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
tree
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...
tree
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...
tree
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3814 don’t automatically launch the news...
tree
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3814 NONEWS property
tree
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commitdiff
2022-03-04
Mateusz Warowny
JAL-3878 Change visibility of WebService methods to...
tree
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commitdiff
2022-03-03
Mateusz Warowny
JAL-3878 Create alignment service "backend" classes
tree
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commitdiff
2022-03-03
Mateusz Warowny
JAL-3878 Remove unused JobStatus methods
tree
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commitdiff
2022-03-03
Mateusz Warowny
JAL-3878 Create abstract base classes for non-interacti...
tree
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commitdiff
2022-03-02
Jim Procter
Merge branch 'benreview/JAL-3691_for_2_11_2_getdownrebu...
tree
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commitdiff
2022-03-02
Mateusz Warowny
JAL-3878 Fix typo in method name (getAlignemnt)
tree
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commitdiff
2022-03-02
Mateusz Warowny
JAL-3878 Add serviceExecutor to AlignmentViewport.
tree
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commitdiff
2022-03-02
Jim Procter
JAL-3619 fix up error messages and try to bail quietly...
tree
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commitdiff
2022-03-02
Jim Procter
JAL-3619 fix up warning message and minimal patch to...
tree
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commitdiff
2022-02-28
Mateusz Warowny
JAL-3878 Separate server job handle from task's sub...
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Provide javadoc for WebServiceClientI interface
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Create skeleton for alignment service action
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Create abstract base class for actions.
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Fix typo in getTooltip method name
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Move WebServiceJob class to jalview.ws2.api...
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Move CredentialType class to jalview.ws2.api...
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Create TaskEventListener interface.
tree
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commitdiff
2022-02-18
Mateusz Warowny
JAL-3878 Create action and task interfaces.
tree
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commitdiff
2022-02-17
Mateusz Warowny
JAL-3878 Add interactive flag to WebService class
tree
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commitdiff
2022-02-17
Mateusz Warowny
JAL-3878 Create web service class - container for servi...
tree
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commitdiff
2022-02-17
Mateusz Warowny
JAL-3878 Add WebServiceJob class.
tree
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commitdiff
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