2019-01-04 |
gmungoc | JAL-3180 fix By Annotation selection state in colour... |
tree | commitdiff |
2019-01-04 |
gmungoc | JAL-3181 refactor: extracted buildLinkMenu() for testab... feature/JAL-3181linkOrdering |
tree | commitdiff |
2019-01-04 |
gmungoc | JAL-3181 simplified code and test |
tree | commitdiff |
2019-01-03 |
gmungoc | JAL-3181 order link menu items |
tree | commitdiff |
2018-12-21 |
gmungoc | JAL-1767 minimise local variable scope |
tree | commitdiff |
2018-12-20 |
Jim Procter | JAL-1767 port save/load PCA panel to JAXB - JAL-3063 |
tree | commitdiff |
2018-12-20 |
Jim Procter | JAL-3171 JAL-3063 merge updates from JAL-1767 |
tree | commitdiff |
2018-12-19 |
Jim Procter | Merge branch 'features/JAL-1767pcaInProject' into bug... |
tree | commitdiff |
2018-12-19 |
gmungoc | JAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621 |
tree | commitdiff |
2018-12-19 |
gmungoc | JAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature |
tree | commitdiff |
2018-12-19 |
gmungoc | JAL-2791 JAL-2808 correct Javadoc for api method |
tree | commitdiff |
2018-12-17 |
Jim Procter | Merge branch 'bug/JAL-2864nullOverviewCanvas' into... |
tree | commitdiff |
2018-12-17 |
Jim Procter | Merge branch 'bug/JAL-2750' into develop |
tree | commitdiff |
2018-12-17 |
Jim Procter | Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures |
tree | commitdiff |
2018-12-14 |
Jim Procter | JAL-3171 record mapping between unmarshalled sequence... |
tree | commitdiff |
2018-12-14 |
Jim Procter | JAL-3171 raise warning when a dataset reference exists... |
tree | commitdiff |
2018-12-14 |
Jim Procter | JAL-3171 resolve dataset for imported projects via... |
tree | commitdiff |
2018-12-14 |
Jim Procter | JAL-3171 register existing dataset for new view |
tree | commitdiff |
2018-12-14 |
Ben Soares | JAL-3130 single class testing on CLI with ant [ -Dclass... |
tree | commitdiff |
2018-12-13 |
Ben Soares | JAL-3130 Use non-deprecated check for Mac CMD key press |
tree | commitdiff |
2018-12-13 |
Ben Soares | JAL-3130 Attempting to fix 8 tests that pass on a Mac... |
tree | commitdiff |
2018-12-11 |
Ben Soares | JAL-3130 Turns out Quit/About/Preferences handlers... |
tree | commitdiff |
2018-12-10 |
gmungoc | JAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite |
tree | commitdiff |
2018-12-10 |
gmungoc | JAL-3169 leave file browser open on Cancel in overwrite... |
tree | commitdiff |
2018-12-06 |
Ben Soares | JAL-3130 incorporating feature/JAL-3063jaxbNoCastor... |
tree | commitdiff |
2018-12-06 |
gmungoc | JAL-1854 fix Checkstyle import violations |
tree | commitdiff |
2018-12-03 |
gmungoc | JAL-3063 Castor removed from codebase |
tree | commitdiff |
2018-12-03 |
gmungoc | Merge branch 'feature/JAL-3063JAXB' into feature/JAL... |
tree | commitdiff |
2018-12-03 |
Ben Soares | JAL-3130 Added flagged runtime 'Reflection' check on... |
tree | commitdiff |
2018-11-30 |
gmungoc | JAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu |
tree | commitdiff |
2018-11-30 |
gmungoc | JAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden |
tree | commitdiff |
2018-11-29 |
gmungoc | JAL-3140 NCList now via IntervalStore library |
tree | commitdiff |
2018-11-28 |
gmungoc | JAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview |
tree | commitdiff |
2018-11-28 |
gmungoc | JAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts |
tree | commitdiff |
2018-11-22 |
gmungoc | JAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange |
tree | commitdiff |
2018-11-20 |
Jim Procter | JAL-3127 Sequence ID Colour and nominal spanish translation |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3127 javadoc, don’t darken white when shading resid... |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3156 JAL-3127 code tidy |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3127 drop redundant hidden representative sequences... |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3127 JAL-2773 don’t need to call paintAlignment... |
tree | commitdiff |
2018-11-19 |
Jim Procter | JAL-3127 tidier tree group colour -> view propagation |
tree | commitdiff |
2018-11-19 |
gmungoc | JAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag |
tree | commitdiff |
2018-11-09 |
Ben Soares | JAL-1988 This fixes the Quit response when user cancels... |
tree | commitdiff |
2018-11-09 |
Jim Procter | JAL-3127 polished setColor after review |
tree | commitdiff |
2018-11-08 |
Ben Soares | JAL-1988 JAL-3130 Now we're in Java 11 land, using... |
tree | commitdiff |
2018-11-08 |
Ben Soares | JAL-1988 tidying, plus don't add Preferences to Tools... |
tree | commitdiff |
2018-11-08 |
Ben Soares | JAL-1988 JAVA 11 enabled version with Quit, Preferences... |
tree | commitdiff |
2018-11-05 |
Ben Soares | JAL-1988 Investigating... |
tree | commitdiff |
2018-11-05 |
Ben Soares | JAL-3141 couple of minor fixes for example files being... |
tree | commitdiff |
2018-11-02 |
Ben Soares | JAL-3141 Tests now available and working, bringing... |
tree | commitdiff |
2018-11-01 |
Ben Soares | JAL-3141 Preferences 'Backups' tab now fits. Moved... |
tree | commitdiff |
2018-10-31 |
Ben Soares | JAL-3141 Preferences 'Backups' tab now working. Doesn... |
tree | commitdiff |
2018-10-25 |
Ben Soares | JAL-3141 Ostensibly all backups working for alignment... |
tree | commitdiff |
2018-10-25 |
gmungoc | JAL-3143 comma-delimited feature attributes for alleles, |
tree | commitdiff |
2018-10-25 |
gmungoc | JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF |
tree | commitdiff |
2018-10-24 |
Ben Soares | JAL-3141 Code checkout. Not compiling. |
tree | commitdiff |
2018-10-24 |
Ben Soares | JAL-3141 Code checkout. Not compiling. |
tree | commitdiff |
2018-10-23 |
Ben Soares | BackupFilter and other unfinished business |
tree | commitdiff |
2018-10-23 |
gmungoc | JAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures |
tree | commitdiff |
2018-10-22 |
Ben Soares | JAL-3141 Taken the backing up code out of FileChooser... |
tree | commitdiff |
2018-10-22 |
Ben Soares | JAL-3141 Taken the backing up code out of FileChooser... |
tree | commitdiff |
2018-10-22 |
Ben Soares | JAL-3141 Tidying |
tree | commitdiff |
2018-10-19 |
Ben Soares | JAL-3141 Backup files being created with default suffix... |
tree | commitdiff |
2018-10-16 |
Jim Procter | JAL-3127 always look up sequence ID colour from view... |
tree | commitdiff |
2018-10-16 |
Jim Procter | JAL-3127 reinstate ability to set sequence ID colour... |
tree | commitdiff |
2018-10-16 |
Jim Procter | JAL-3127 use AlignViewportI.addGroup to create & propag... |
tree | commitdiff |
2018-10-16 |
Jim Procter | JAL-3127 use AlignViewportI.addGroup() to add group... |
tree | commitdiff |
2018-10-16 |
Jim Procter | viewport flag to indicate when structure view needs... |
tree | commitdiff |
2018-10-09 |
Jim Procter | JAL-3127 Colour sequences by ID - need to check that... |
tree | commitdiff |
2018-10-09 |
Jim Procter | JAL-3127 TODO - resolve reference to Viewport for group... |
tree | commitdiff |
2018-10-09 |
Jim Procter | JAL-3127 pass reference to AlignViewportI when creating... |
tree | commitdiff |
2018-10-08 |
gmungoc | JAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg |
tree | commitdiff |
2018-10-08 |
gmungoc | JAL-1244 editSequence extract method refactoring |
tree | commitdiff |
2018-10-05 |
gmungoc | JAL-1244 improved status message for insert/delete gap |
tree | commitdiff |
2018-10-04 |
gmungoc | JAL-3132 status message for sequence and/or graph group... |
tree | commitdiff |
2018-10-04 |
gmungoc | JAL-1244 no status message (yet) for locked edit of... |
tree | commitdiff |
2018-10-04 |
gmungoc | JAL-1244 status message for insert/delete gaps on singl... |
tree | commitdiff |
2018-10-04 |
gmungoc | JAL-1244 status message while dragging a stretch group |
tree | commitdiff |
2018-10-04 |
gmungoc | JAL-3132 set status message when over sequence id or... |
tree | commitdiff |
2018-10-04 |
gmungoc | JAL-3093 unit tests, no mouse action over left/right... |
tree | commitdiff |
2018-10-03 |
gmungoc | JAL-3093 tweaks to code and test for 3px gap above... |
tree | commitdiff |
2018-10-02 |
gmungoc | JAL-3093 unit tests for SeqPanel.findMousePosition |
tree | commitdiff |
2018-10-02 |
gmungoc | JAL-3093 limited Consensus popup menu when in wrapped... |
tree | commitdiff |
2018-10-02 |
gmungoc | JAL-3093 added MousePos.isOverAnnotation() for extra... |
tree | commitdiff |
2018-10-01 |
gmungoc | JAL-3093 'read-only' annotations when in wrapped mode |
tree | commitdiff |
2018-10-01 |
gmungoc | JAL-3093 refactor (+test) Annotation Labels tooltip... |
tree | commitdiff |
2018-10-01 |
gmungoc | JAL-3093 show annotation tooltips and status message... |
tree | commitdiff |
2018-09-28 |
gmungoc | JAL-3063 service param files read/saved using JAXB... |
tree | commitdiff |
2018-09-28 |
gmungoc | JAL-3063 top level element added to JalviewWsParamSet.xsd |
tree | commitdiff |
2018-09-27 |
gmungoc | JAL-2791 refactored Export Features to apply all visibi... |
tree | commitdiff |
2018-09-27 |
gmungoc | JAL-2791 new method to test if feature fails colour... |
tree | commitdiff |
2018-09-27 |
gmungoc | JAL-2791 method that tests all conditions for feature... |
tree | commitdiff |
2018-09-26 |
gmungoc | JAL-3125 tidy up |
tree | commitdiff |
2018-09-26 |
gmungoc | JAL-3125 avoid slider 'rounding' threshold field value |
tree | commitdiff |
2018-09-24 |
gmungoc | JAL-3063 tidy commented out code |
tree | commitdiff |
2018-09-21 |
gmungoc | JAL-3063 wrappers with check for null getting optional... |
tree | commitdiff |
2018-09-21 |
gmungoc | JAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour |
tree | commitdiff |
2018-09-20 |
gmungoc | JAL-2843 help text for colour by attribute, feature... |
tree | commitdiff |
2018-09-19 |
gmungoc | JAL-3120 preserve plain colour value when changing... |
tree | commitdiff |
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