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JAL-3905 Fix: wait for response when sending mouseovers. Combined remove old label...
[jalview.git]
/
src
/
jalview
/
2020-05-18
gmungoc
JAL-3621 update to intervalstore v1.1
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-05-18
gmungoc
JAL-3613 remove debug code committed in error
tree
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commitdiff
2020-05-15
gmungoc
JAL-3619 default silently to Jmol if viewerType absent...
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
tree
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commitdiff
2020-05-15
gmungoc
Merge branch 'feature/JAL-3551Pymol' into feature/JAL...
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 raise label on ('highlight') structure residue...
tree
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commitdiff
2020-05-12
gmungoc
JAL-3518 tidy method, remove obsolete comment
tree
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commitdiff
2020-05-12
gmungoc
JAL-3518 failsafe check for null Jmol filename while...
tree
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commitdiff
2020-05-11
gmungoc
JAL-3551 concatenate colour by sequence commands for...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 JAL-3551 viewer text/variables generalised...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 restore saved ChimeraX session from project
tree
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commitdiff
2020-05-04
Ben Soares
JAL-3608 streamlined LaF methods and allow specificying...
tree
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commitdiff
2020-05-03
Ben Soares
JAL-3608 also look at user pref PREFERRED_LAF
tree
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commitdiff
2020-05-01
gmungoc
JAL-3613 check sequence overlap when matching search...
tree
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commitdiff
2020-05-01
Ben Soares
JAL-3608 Now reporting the actual LookAndFeel in Java...
tree
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commitdiff
2020-05-01
Ben Soares
JAL-3608 Added java builtin NimbusLookAndFeel option...
tree
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commitdiff
2020-04-30
Ben Soares
JAL-3608 Enforcing MetalLookAndFeel as default on linux...
tree
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commitdiff
2020-04-30
Ben Soares
JAL-3608 Added 'metal' option for laf property
tree
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commitdiff
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
tree
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commitdiff
2020-04-30
gmungoc
JAL-3551 tidied error handling for HTTP request
tree
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commitdiff
2020-04-25
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-04-23
soares
JAL-3608 JAL-3416 Added a 'gtk' option. Not currently...
tree
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commitdiff
2020-04-22
soares
JAL-3608 saved in Eclipse with auto formatting
tree
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commitdiff
2020-04-22
Ben Soares
JAL-3608 Added CrossPlatform LaF and made configurable...
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3574filterByPOS' into documentati...
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3567virtualFeatureCoordinates...
tree
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commitdiff
2020-04-21
Jim Procter
JAL-367 code tidy
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3567 translated rather than imputed peptide
tree
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commitdiff
2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
tree
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commitdiff
2020-04-17
gmungoc
JAL-3567 unit tests for linked feature tooltips
tree
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commitdiff
2020-04-16
BobHanson
JAL-3587 Load Project bug
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 adjust layout of linked feature report, unit...
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 added 'imputed by Jalview' to protein conseque...
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 report mapped location for virtual features...
tree
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commitdiff
2020-04-14
Jim Procter
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
tree
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commitdiff
2020-04-14
gmungoc
JAL-3583 remove debug logging, Javadoc added
tree
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commitdiff
2020-04-13
gmungoc
JAL-3574 Matcher with integer/long value pattern (e...
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 change redacted
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 don't draw text over features if Show Text...
tree
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commitdiff
2020-04-12
gmungoc
JAL-3583 consistent last[Formatted]Tooltip, show once...
tree
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commitdiff
2020-04-07
soares
merge from develop: Most of the changes
tree
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commitdiff
2020-04-07
BobHanson
JAL-3589 (old Platform) fix for Jalvew-JS/develop only.
tree
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commitdiff
2020-04-07
gmungoc
JAL-3210 fudge for JalviewJS to avoid IntervalStore...
tree
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commitdiff
2020-04-06
Jim Procter
JAL-3407 redact java 8 incompatible type inference
tree
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commitdiff
2020-04-06
gmungoc
JAL-3581 no hidden sequence marker if hidden markers...
tree
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commitdiff
2020-04-06
gmungoc
JAL-3581 no hidden sequence marker if hidden markers...
tree
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commitdiff
2020-04-06
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-04-06
gmungoc
JAL-3579 no Feature Editor if features not shown
tree
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commitdiff
2020-03-31
gmungoc
JAL-3210 JAL-3130 merge changes to JSON processing
tree
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commitdiff
2020-03-31
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-30
Jim Procter
JAL-3407 JAL-3130 back out java 9+ syntax that breaks...
tree
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commitdiff
2020-03-30
gmungoc
JAL-3210 debug logging commented out
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-20
Jim Procter
JAL-3549 javadoc
tree
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commitdiff
2020-03-19
gmungoc
JAL-3305 don't propagate an empty SelectionGroup to...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 tidying, improved commands, fix Jmol model...
tree
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commitdiff
2020-03-16
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 the correct PyMOL colour by chain command
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-03-09
gmungoc
JAL-3528 unit tests added for failed lookup, Javadoc
tree
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commitdiff
2020-03-09
gmungoc
JAL-3549 JAL-3305 no Sort By Score / Density if no...
tree
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commitdiff
2020-03-09
gmungoc
JAL-3412 update layout whenever desired id width changes
testbuild/JAL-3412_getIdWidth_test
tree
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commitdiff
2020-03-06
gmungoc
JAL-3187 unit test for findComplementFeaturesAtResidue
tree
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commitdiff
2020-03-06
gmungoc
Merge branch 'feature/JAL-3468featureDescriptionEllipsi...
tree
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commitdiff
2020-03-06
gmungoc
JAL-3468 i18n and additional unit tests
feature/JAL-3468featureDescriptionEllipsis
tree
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commitdiff
2020-03-05
Jim Procter
Merge branch 'improvement/JAL-3543_dont_report_null_ver...
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 small tidy
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 improvement to feature description truncation...
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 Obsessively fixed self-closing <br/> tags
tree
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commitdiff
2020-03-03
soares
JAL-3468 Adapted methods to report how many features...
tree
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commitdiff
2020-03-03
gmungoc
JAL-3158 superseded superposeStructures methods removed
tree
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commitdiff
2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
tree
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commitdiff
2020-03-02
Jim Procter
JAL-3407 redact Java 8 incompatible '<>' with anonymous...
tree
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commitdiff
2020-02-29
gmungoc
JAL-3518 correct override for ChimeraX colour by residues
tree
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commitdiff
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
tree
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commitdiff
2020-02-27
Ben Soares
JAL-3543 remove debugging output
improvement/JAL-3543_dont_report_null_versions_in_java_console
tree
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commitdiff
2020-02-27
Ben Soares
Merge branch 'develop' into improvement/JAL-3543_dont_r...
tree
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commitdiff
2020-02-27
Ben Soares
JAL-3543 Conditional reporting of Install4j and Getdown...
tree
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3412idWidthDiscrepancy' into...
bug/JAL-3412idWidthDiscrepancy
tree
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3296changeStartInvalidateCursor...
tree
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commitdiff
2020-02-26
Jim Procter
Merge branch 'bug/JAL-3477_memory_max_allocation' into...
tree
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commitdiff
2020-02-26
Jim Procter
Merge branch 'improvement/JAL-3449_add_install4j_instal...
tree
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commitdiff
2020-02-21
Jim Procter
Merge branch 'bug/JAL-3536getCrossrefTwice' into develop
tree
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commitdiff
2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 ensure transparency slider position is updated...
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 avoid repainting twice in splitframe
tree
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commitdiff
2020-02-21
Jim Procter
Merge branch 'develop' into features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 general pull-up/removal of common or unused...
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 nice to have enabling/disabling of apply/cance...
features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 use the recommended way of catching tab select...
tree
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commitdiff
2020-02-20
gmungoc
JAL-3187 repaint complement after loading on features
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 individual feature settings panel has revert...
tree
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commitdiff
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 i18n for titles in windows/tabs
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3535 todo re titles for CDS and Protein views in...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 - tabbed pane is nulled when feature settings...
tree
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commitdiff
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