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more clustalx bugs fixed
[jalview.git]
/
src
/
jalview
/
2005-05-25
amwaterhouse
more clustalx bugs fixed
tree
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commitdiff
2005-05-25
amwaterhouse
getHexString added
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commitdiff
2005-05-25
amwaterhouse
all can threshold
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commitdiff
2005-05-25
amwaterhouse
output to textbox
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commitdiff
2005-05-25
amwaterhouse
layout changes
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commitdiff
2005-05-25
amwaterhouse
capitals
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commitdiff
2005-05-25
amwaterhouse
format changes
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commitdiff
2005-05-25
amwaterhouse
remove scrollpane
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commitdiff
2005-05-25
amwaterhouse
Capitalise
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commitdiff
2005-05-25
amwaterhouse
c&p changed
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commitdiff
2005-05-25
amwaterhouse
use getHexString in util
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commitdiff
2005-05-25
amwaterhouse
usercolours changed
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commitdiff
2005-05-25
amwaterhouse
output text to textbox
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commitdiff
2005-05-25
amwaterhouse
all colours can threshold
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commitdiff
2005-05-25
amwaterhouse
selectiongroup could be null
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commitdiff
2005-05-25
amwaterhouse
saves usercolours
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commitdiff
2005-05-25
amwaterhouse
formatforoutput never used
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commitdiff
2005-05-25
amwaterhouse
output values to textbox
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commitdiff
2005-05-25
amwaterhouse
toString method added
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commitdiff
2005-05-25
amwaterhouse
XML schema changes
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commitdiff
2005-05-25
amwaterhouse
usercolourscheme changed
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commitdiff
2005-05-25
amwaterhouse
formatting changes
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commitdiff
2005-05-25
amwaterhouse
all colours can threshold
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commitdiff
2005-05-25
amwaterhouse
usercolours changed
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commitdiff
2005-05-25
amwaterhouse
remove comment
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commitdiff
2005-05-25
amwaterhouse
can output details to textbox
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commitdiff
2005-05-25
jprocter
added jalview.browser property so a linux user can...
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commitdiff
2005-05-25
jprocter
doh - compile before commit!
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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commitdiff
2005-05-25
jprocter
Improved consistency between JPredWS and MsaWS
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commitdiff
2005-05-25
jprocter
base class for web service clients.
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commitdiff
2005-05-24
jprocter
title parameter for single sequence prediction.
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commitdiff
2005-05-24
jprocter
Added more firePropertyChange calls - mainly for sequen...
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commitdiff
2005-05-24
jprocter
extended the UpdatePlaceholders to check for any new...
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commitdiff
2005-05-24
jprocter
added PropertyChangeListeners for alignviewport.alignme...
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commitdiff
2005-05-24
amwaterhouse
remove .
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commitdiff
2005-05-24
amwaterhouse
URL getresource adds %20 for spaces. Use user.dir instead
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commitdiff
2005-05-24
amwaterhouse
filefilter might not be JalviewFileFilter
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commitdiff
2005-05-24
amwaterhouse
equalsIgnoreCase
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commitdiff
2005-05-24
amwaterhouse
setDefaultFileFormat
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commitdiff
2005-05-24
amwaterhouse
replace get with elementAt
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commitdiff
2005-05-24
amwaterhouse
setgraphics black
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commitdiff
2005-05-24
amwaterhouse
setgraphics black
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commitdiff
2005-05-24
jprocter
several ordering bug fixes.
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commitdiff
2005-05-23
jprocter
Added PadGaps and made treeSortMenu dynamic (it gets...
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commitdiff
2005-05-23
jprocter
added some assertions and rangechecks for insert/delete...
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commitdiff
2005-05-23
jprocter
added getSequencesInOrder (part of refactor from AlignP...
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commitdiff
2005-05-23
jprocter
editMenuPadGaps and sortByTree/sort items
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commitdiff
2005-05-23
jprocter
fixed window title names for prediction on MSA or Sequence.
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commitdiff
2005-05-23
amwaterhouse
colour groups by text colour
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commitdiff
2005-05-23
amwaterhouse
make sure fonts are not null
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commitdiff
2005-05-23
amwaterhouse
remove separator
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commitdiff
2005-05-23
amwaterhouse
new savestate method
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commitdiff
2005-05-23
jprocter
Ugly but improved recovery of sequence names, starts...
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commitdiff
2005-05-23
jprocter
bug fix for wierdness retrieving QUERY sequence index.
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commitdiff
2005-05-23
amwaterhouse
boxes, colour text, show text added to groups
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commitdiff
2005-05-23
amwaterhouse
historyitem added
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commitdiff
2005-05-22
jprocter
include MsaWS ordering but not perfect (undo destroys...
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commitdiff
2005-05-22
jprocter
Added alignment ordering option to 'Sort by' and implem...
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commitdiff
2005-05-20
jprocter
Semiworking generic MSA client
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commitdiff
2005-05-20
jprocter
added placeholder indicators and menu item
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commitdiff
2005-05-20
jprocter
Various sort methods added and bugs fixed (coping with...
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commitdiff
2005-05-20
amwaterhouse
DEFAULT_FILE_FORMAT added
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commitdiff
2005-05-20
jprocter
sequence place holder reveal menu item.
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commitdiff
2005-05-20
jprocter
added tree node property for sequence placeholders.
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commitdiff
2005-05-20
amwaterhouse
if fullid shown, resize fonts
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commitdiff
2005-05-20
amwaterhouse
startup file added
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commitdiff
2005-05-20
amwaterhouse
a flauss changes
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commitdiff
2005-05-20
amwaterhouse
scroller is now a panel
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commitdiff
2005-05-20
amwaterhouse
look for startup file
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commitdiff
2005-05-20
amwaterhouse
scroller is now a panel, removes border
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commitdiff
2005-05-20
amwaterhouse
change ActionListeners to ItemListeners
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commitdiff
2005-05-20
amwaterhouse
copy order maintained
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commitdiff
2005-05-20
amwaterhouse
Fasta FASTA
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commitdiff
2005-05-19
amwaterhouse
returns name if given colourscheme
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commitdiff
2005-05-19
amwaterhouse
A Flauss reccommends
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commitdiff
2005-05-19
amwaterhouse
A Flauss recommends
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commitdiff
2005-05-19
amwaterhouse
A flauss recommendations
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commitdiff
2005-05-19
amwaterhouse
filechooser has multiple filters
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commitdiff
2005-05-19
amwaterhouse
loading/saving changes
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commitdiff
2005-05-19
amwaterhouse
changes to jalviewfilechooser
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commitdiff
2005-05-19
amwaterhouse
% identity is consensus
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commitdiff
2005-05-19
amwaterhouse
no need for right mouse click
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commitdiff
2005-05-19
amwaterhouse
Load and Save State added
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commitdiff
2005-05-19
amwaterhouse
dont show redundant menuitems
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commitdiff
2005-05-19
amwaterhouse
load in gap symbol
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commitdiff
2005-05-19
amwaterhouse
block edit bug fixed
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commitdiff
2005-05-19
amwaterhouse
maintain original threshold value
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commitdiff
2005-05-19
amwaterhouse
changes to JalviewFileChooser
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commitdiff
2005-05-19
amwaterhouse
new class
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commitdiff
2005-05-19
amwaterhouse
calculate max and min for graph
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commitdiff
2005-05-19
amwaterhouse
release version
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commitdiff
2005-05-19
amwaterhouse
Copied sequences title altered
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commitdiff
2005-05-19
amwaterhouse
remove redundant menuitems
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commitdiff
2005-05-19
amwaterhouse
remove actionevents
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commitdiff
2005-05-19
amwaterhouse
group editing bug fixed
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commitdiff
2005-05-19
amwaterhouse
toString () method added
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commitdiff
2005-05-19
amwaterhouse
Created by Castor
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commitdiff
2005-05-12
amwaterhouse
conservation removed
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commitdiff
2005-05-12
amwaterhouse
separator added
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commitdiff
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