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patch re JAL-554
[jalview.git]
/
src
/
jalview
/
2010-03-22
jprocter
only do scaletofit for annotation labels
tree
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commitdiff
2010-03-22
jprocter
ensure that all bits of annotation panel (slider, annot...
tree
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commitdiff
2010-03-22
jprocter
note to callers of adjustPanelHeight
tree
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commitdiff
2010-03-22
jprocter
todo and sensible default setting of min/max for histog...
tree
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commitdiff
2010-03-22
jprocter
See note in Mantis bug #55537 : inconsistency between...
tree
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commitdiff
2010-03-18
jprocter
disabled simple blast parser for 2.4.1 release
tree
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commitdiff
2010-03-17
jprocter
simple query anchored blast report parser (shh!)
tree
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commitdiff
2010-03-17
jprocter
simple query anchored blast report parser (shh!)
tree
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commitdiff
2010-03-12
jprocter
1.1 compatibility
tree
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commitdiff
2010-03-11
jprocter
warning for unresolvable database source strings (or...
tree
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commitdiff
2010-03-11
jprocter
finer column label format control and new 'scale label...
tree
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commitdiff
2010-03-11
jprocter
new ROWPROPERTIES statement for setting an individual...
tree
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commitdiff
2010-03-11
jprocter
pass any warning messages to StdErr - also todo to...
tree
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commitdiff
2010-03-11
jprocter
raise a warning if column annotation gets truncated.
tree
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commitdiff
2010-03-11
jprocter
individual label format settings for each annotation...
tree
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commitdiff
2010-02-10
jprocter
todos re adding groupUrl menu item code
tree
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commitdiff
2010-02-10
jprocter
das feature fetch followed by png output fixed (bug...
tree
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commitdiff
2010-02-10
jprocter
only need to remove progress bar if fetch wasn't cancel...
tree
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commitdiff
2010-02-10
jprocter
commented out enfin/envision2 sequence submission URL...
tree
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commitdiff
2010-02-10
jprocter
allow das fetch to be blocking or non-blocking (bug...
tree
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commitdiff
2010-02-10
jprocter
progress bar hashtable entry was not being removed...
tree
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commitdiff
2010-02-09
jprocter
groupURL link prototype
tree
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commitdiff
2010-02-09
jprocter
groupURL link preference variables
tree
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commitdiff
2010-02-09
jprocter
todo
tree
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commitdiff
2010-02-09
jprocter
token replacement engine for generation of urls for...
tree
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commitdiff
2010-02-09
jprocter
qsort objects on integers
tree
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commitdiff
2010-01-28
jprocter
quick fix for very broken checkin - see Mantis bug...
tree
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commitdiff
2010-01-28
jprocter
todo for bug #0058199
tree
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commitdiff
2010-01-28
jprocter
more rigorous annotation row content check to limit...
tree
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commitdiff
2009-11-23
jprocter
initialise current and defaultAlignFrame and debug...
tree
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commitdiff
2009-11-13
jprocter
make fileparse errors easier to debug by dumping file...
tree
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commitdiff
2009-11-09
jprocter
more spin on GA prompt
tree
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commitdiff
2009-11-09
jprocter
no Vector(Vector) copy constructor in 1.2
tree
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commitdiff
2009-11-09
jprocter
user friendly GA and privacy statement
tree
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commitdiff
2009-11-06
jprocter
only append score if it is not NaN
tree
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commitdiff
2009-11-06
jprocter
properly import column selection from message
tree
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commitdiff
2009-11-06
jprocter
potential null pointer fix
tree
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commitdiff
2009-11-06
jprocter
setting and merging selected columns from another selec...
tree
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commitdiff
2009-11-06
jprocter
better formed generic select residue X expression
tree
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commitdiff
2009-11-03
jprocter
pasted file contents should never be added to the recen...
tree
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commitdiff
2009-11-02
jprocter
gracefully cope with non-standard nucleotide or amino...
tree
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commitdiff
2009-10-30
jprocter
na pdb: highlight any part of a residue, not just the...
tree
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commitdiff
2009-10-27
jprocter
todo
tree
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commitdiff
2009-10-27
jprocter
fix null pointer exception in redraw for short sequence...
tree
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commitdiff
2009-10-14
jprocter
quick fix for nullpointer in column selection when...
tree
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commitdiff
2009-10-13
jprocter
fix for pfam files with empty annotation or sequence...
tree
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commitdiff
2009-10-13
jprocter
prototype Java log window and sticky configuration
tree
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commitdiff
2009-10-13
jprocter
desktop window scaled to current window geometry, proto...
tree
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commitdiff
2009-10-13
jprocter
prompt user to enable usage stats
tree
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commitdiff
2009-10-13
jprocter
added preferences for usage stats, questionnaire check...
tree
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commitdiff
2009-10-13
jprocter
use Pdb database source for fetching and warn user...
tree
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commitdiff
2009-10-13
jprocter
safer OOM handling when importing from XML
tree
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commitdiff
2009-10-13
jprocter
enact on a boolean configuration option, prompting...
tree
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commitdiff
2009-10-13
jprocter
fix potential race condition
tree
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commitdiff
2009-10-13
jprocter
documented privacy settings, versioncheck controlled...
tree
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commitdiff
2009-10-05
jprocter
immediately show memory usage
tree
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commitdiff
2009-09-22
jprocter
allow the display character below a graph to be explici...
tree
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commitdiff
2009-09-10
jprocter
fix null pointer exception when using blosum colourscheme
tree
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commitdiff
2009-09-03
jprocter
allow middle-button drag to change height of annotation...
tree
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commitdiff
2009-08-21
jprocter
1.1 compatibility
tree
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commitdiff
2009-08-21
jprocter
render sequence logo over consensus histogram
tree
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commitdiff
2009-08-21
jprocter
single-click highlights, double click selectes th assoc...
tree
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commitdiff
2009-08-21
jprocter
group consensus/conservation calculated from start...
tree
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commitdiff
2009-08-21
jprocter
viewport setting for displaying sequence logos
tree
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commitdiff
2009-08-21
jprocter
reversed order of addition of group consensus and conse...
tree
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commitdiff
2009-08-21
jprocter
prototype make groups from selection function and shift...
tree
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commitdiff
2009-08-21
jprocter
prototype make groups from selection function
tree
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commitdiff
2009-08-21
jprocter
new sortbyPID for specific start/end region
tree
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commitdiff
2009-08-21
jprocter
race condition null pointer bugfix
tree
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commitdiff
2009-08-21
jprocter
bugfix
tree
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commitdiff
2009-08-21
jprocter
todo for 2.5
tree
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commitdiff
2009-08-21
jprocter
null pointer exception bug fix
tree
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commitdiff
2009-08-21
jprocter
commented debug lines indicating calculation progress
tree
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commitdiff
2009-08-21
jprocter
start/stop for per-group consensus calculation
tree
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commitdiff
2009-08-21
jprocter
store symbol profile and extract it for display
tree
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commitdiff
2009-08-21
jprocter
pir format ambiguity and todo regarding 'format overrid...
tree
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commitdiff
2009-08-21
jprocter
basic implementation of profile display and todos
tree
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commitdiff
2009-08-21
jprocter
todo
tree
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commitdiff
2009-08-21
jprocter
routines for creating groups over an alignment
tree
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commitdiff
2009-08-21
jprocter
asparagine is polar but not charged
tree
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commitdiff
2009-08-03
jprocter
fix feature creation for selected region beyond end...
tree
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commitdiff
2009-07-24
jprocter
explicitly grab all permissions for application executi...
tree
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commitdiff
2009-07-24
jprocter
update annotation when group state is changed
tree
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commitdiff
2009-07-24
jprocter
show group annotation menu entries
tree
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commitdiff
2009-07-24
jprocter
colour by label prototype flag
tree
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commitdiff
2009-07-24
jprocter
catch null pointer exception in headless context
tree
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commitdiff
2009-07-24
jprocter
get consensus sequence and set ignore gaps flag for...
tree
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commitdiff
2009-07-24
jprocter
annotation update method synchronises group annotation
tree
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commitdiff
2009-07-24
jprocter
headless warning messages, prototype group annotation...
tree
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commitdiff
2009-07-24
jprocter
refactored conservation thread, added showgroupannotati...
tree
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commitdiff
2009-07-24
jprocter
conservation thread refactored from AlignViewport
tree
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commitdiff
2009-07-24
jprocter
feature colour by label flag/style
tree
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commitdiff
2009-07-24
jprocter
headless test
tree
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commitdiff
2009-07-24
jprocter
todo
tree
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commitdiff
2009-07-24
jprocter
implement new insert annotation row method and ensure...
tree
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commitdiff
2009-07-24
jprocter
insert annotation at specific position
tree
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commitdiff
2009-07-24
jprocter
optional sequencegroup ref for annotation row
tree
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commitdiff
2009-07-24
jprocter
sequence groups carry their own conservation and consen...
tree
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commitdiff
2009-07-24
jprocter
complete alignment annotation row procedure
tree
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commitdiff
2009-06-24
jprocter
ensure annotation row height is honoured for new VAMSAS...
tree
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commitdiff
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