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New instructions for making groups file
[jalview.git]
/
src
/
jalview
/
2005-12-05
amwaterhouse
New instructions for making groups file
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commitdiff
2005-12-05
amwaterhouse
SequenceFeature mouse over text updated
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commitdiff
2005-12-05
amwaterhouse
Remove image import
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commitdiff
2005-12-05
amwaterhouse
Save Feature Rendering
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commitdiff
2005-12-05
amwaterhouse
Readjustments
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commitdiff
2005-12-05
amwaterhouse
Allow for uniprot in name
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commitdiff
2005-12-05
amwaterhouse
Prov not used in this version
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commitdiff
2005-12-05
amwaterhouse
Use regex on seq names
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commitdiff
2005-12-05
amwaterhouse
not needed
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commitdiff
2005-12-05
amwaterhouse
Save features
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commitdiff
2005-12-02
amwaterhouse
Output from newick menu item bug fixed
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commitdiff
2005-12-02
amwaterhouse
Remove comments
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commitdiff
2005-12-02
amwaterhouse
Sequence, not SequenceI
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commitdiff
2005-12-02
amwaterhouse
Reset frame position on startup
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commitdiff
2005-12-02
amwaterhouse
SequenceFeatures is null by default
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commitdiff
2005-12-02
amwaterhouse
Null pointer removed
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commitdiff
2005-12-02
amwaterhouse
Larger for mac
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commitdiff
2005-11-30
amwaterhouse
Only seek for sequences without features
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commitdiff
2005-11-30
amwaterhouse
Load pdb file with applet
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commitdiff
2005-11-30
amwaterhouse
AppletPDBViewer needs to know type of file transfer
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commitdiff
2005-11-30
amwaterhouse
Get viewport and seqcanvas methods
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commitdiff
2005-11-30
amwaterhouse
Parse id before url completion
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commitdiff
2005-11-30
amwaterhouse
REmove import
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commitdiff
2005-11-30
amwaterhouse
Name parsing
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commitdiff
2005-11-30
amwaterhouse
Make dataset with getName, not displayid
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commitdiff
2005-11-30
amwaterhouse
GetResidueBoxColour needs no colourscheme
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commitdiff
2005-11-30
amwaterhouse
Parse id before showing uniprot link
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commitdiff
2005-11-29
amwaterhouse
Add your own label
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commitdiff
2005-11-29
amwaterhouse
No need for method or chain
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commitdiff
2005-11-29
amwaterhouse
Read in Protein name
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commitdiff
2005-11-29
amwaterhouse
Uniprot retrieves features from XML
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commitdiff
2005-11-29
amwaterhouse
Parse id before making URL
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commitdiff
2005-11-29
amwaterhouse
Features added removed from alignment
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commitdiff
2005-11-29
amwaterhouse
ExactMapping is in pdbchain
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commitdiff
2005-11-29
amwaterhouse
Save features and pdbids
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commitdiff
2005-11-28
amwaterhouse
new Implementation for getting colour quickly
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commitdiff
2005-11-28
amwaterhouse
Correction for feature rendering
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commitdiff
2005-11-28
amwaterhouse
Mapping now performed in PDBChain
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commitdiff
2005-11-28
amwaterhouse
wrapped alignment 1 larger
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commitdiff
2005-11-25
amwaterhouse
Must follow alignmentPosition
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commitdiff
2005-11-25
amwaterhouse
Comment out test lines
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commitdiff
2005-11-25
amwaterhouse
Dont request focus
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commitdiff
2005-11-25
amwaterhouse
-1 adjust
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commitdiff
2005-11-25
amwaterhouse
Correct mapping for pdb file
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commitdiff
2005-11-24
amwaterhouse
Don't parse input id, leave it as it is
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commitdiff
2005-11-24
amwaterhouse
New EBI WS implementation
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commitdiff
2005-11-18
amwaterhouse
Add PDB accession to new sequence
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commitdiff
2005-11-18
amwaterhouse
Allow single line BLC files
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commitdiff
2005-11-18
amwaterhouse
Allow for 1 line BLC files
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commitdiff
2005-11-18
amwaterhouse
Parse name from last index of /
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commitdiff
2005-11-18
amwaterhouse
Use full name in dataset creation
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commitdiff
2005-11-18
amwaterhouse
Show error message outside thread loop
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commitdiff
2005-11-17
amwaterhouse
Hidden tabs and vamsas refs for beta release
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commitdiff
2005-11-17
amwaterhouse
Graphics must be set from nullFrame
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commitdiff
2005-11-17
amwaterhouse
No more isOverview
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commitdiff
2005-11-17
amwaterhouse
If overview is visible, update it
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commitdiff
2005-11-17
amwaterhouse
no more show translation
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commitdiff
2005-11-17
amwaterhouse
Hide Tab settings for build
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commitdiff
2005-11-17
amwaterhouse
Use setRGB rather than color, fillrect
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commitdiff
2005-11-17
amwaterhouse
Move start and end before parsing name
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commitdiff
2005-11-17
amwaterhouse
Hide vamsas settings for build
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commitdiff
2005-11-17
amwaterhouse
Now outputs features and groups, and wrapped alignment...
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commitdiff
2005-11-17
amwaterhouse
Optimized Overview
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commitdiff
2005-11-17
amwaterhouse
Use stringbuffer, not string+
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commitdiff
2005-11-16
amwaterhouse
Don't initialise a char in findIndex
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commitdiff
2005-11-16
amwaterhouse
Don't set chain colours in hashtable
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commitdiff
2005-11-16
amwaterhouse
Highlight from alignment
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commitdiff
2005-11-15
amwaterhouse
Dont use this yet
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commitdiff
2005-11-15
amwaterhouse
Dont use myGraphics
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commitdiff
2005-11-15
amwaterhouse
Removed
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commitdiff
2005-11-15
amwaterhouse
Graphical bits moved into files to save jar size
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commitdiff
2005-11-15
amwaterhouse
Removed to reduce jar size
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commitdiff
2005-11-14
amwaterhouse
Modifications for Applet PDB viewer
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commitdiff
2005-11-14
amwaterhouse
Add getAlignment function
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commitdiff
2005-11-14
amwaterhouse
Catch exceptions
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commitdiff
2005-11-14
amwaterhouse
Use shortname
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commitdiff
2005-11-14
amwaterhouse
getShortName
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commitdiff
2005-11-14
amwaterhouse
findByShortName
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commitdiff
2005-11-11
amwaterhouse
No new PDBViewer
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commitdiff
2005-11-11
amwaterhouse
Last chance, is the sequence without id?
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commitdiff
2005-11-11
amwaterhouse
SequenceFetcher new class
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commitdiff
2005-11-11
amwaterhouse
AddPdbEntry added
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commitdiff
2005-11-11
amwaterhouse
PNG and EPS in ImageMaker
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commitdiff
2005-11-10
amwaterhouse
Allow featuresettings to be enabled on load
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commitdiff
2005-11-10
amwaterhouse
REmove system.out
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commitdiff
2005-11-10
amwaterhouse
AlignSeq takes printstream as arg
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commitdiff
2005-11-10
amwaterhouse
OnlyAddPDBEntries
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commitdiff
2005-11-10
amwaterhouse
Set PDBViewer
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commitdiff
2005-11-10
amwaterhouse
Use Antialiasing
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commitdiff
2005-11-10
amwaterhouse
PDB implementation updated
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commitdiff
2005-11-10
amwaterhouse
If selectionGroup is null, return
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commitdiff
2005-11-10
amwaterhouse
Return accurate RGB for transparent residues
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commitdiff
2005-11-10
amwaterhouse
Make cancelled public variable
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commitdiff
2005-11-10
amwaterhouse
getDbRef
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commitdiff
2005-11-10
amwaterhouse
Get and set PDBEntrys
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commitdiff
2005-11-10
amwaterhouse
PDB is now PDBEntry
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commitdiff
2005-11-10
amwaterhouse
Use StringBUffer instead of String
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commitdiff
2005-11-10
amwaterhouse
PDM mapping
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commitdiff
2005-11-08
amwaterhouse
Preliminary storeJalview
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commitdiff
2005-11-08
amwaterhouse
getVersion added for Castor mapping
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commitdiff
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