-1 adjust

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 3f3bab1..0e6f1bd 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -433,12 +433,12 @@ public class AlignSeq
             }\r
         }\r
 \r
-       /* for(int i=0; i<mapping.length; i++)\r
+      /*  for(int i=0; i<mapping.length; i++)\r
         {\r
           if(mapping[i]!=-1)\r
             System.out.println(i+" "+s2.getCharAt(i) + " " + mapping[i] + " " +\r
                                s1.findIndex(mapping[i])+" "+\r
-                               s1.getCharAt(s1.findIndex(mapping[i])-1));\r
+                               s1.getCharAt(s1.findIndex(mapping[i])));\r
           else\r
             System.out.println(i+" "+"XX"+s2.getCharAt(i));\r
         }*/\r