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JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refactored test suite with TestNG
[jalview.git] / src / jalview /
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 minimise call rate now av.hasHiddenRow... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about... tree | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 javadoc for FeatureRenderer prior... tree | commitdiff
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 minimise data duplication, and report out... tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export... tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 Export settings for flatfile output tree | commitdiff
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well tree | commitdiff
2015-06-17 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-17 gmungocJAL-1778 reinstated this.ssm to handle 'close all windo... tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo... tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null... tree | commitdiff
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports) tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e... tree | commitdiff
2015-06-15 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-15 gmungocJAL-1778 deregister as a listener when panel closed tree | commitdiff
2015-06-15 tcofoegbuJAL-1641 clean up tree | commitdiff
2015-06-15 tcofoegbuJAL-1641 docs for ComplexAlignFile interface tree | commitdiff
2015-06-15 tcofoegbuclean up tree | commitdiff
2015-06-12 tcofoegbuJAL-1627 removed extra spaces at end of tooltip tree | commitdiff
2015-06-12 tcofoegbuJAL-1641 refactor tree | commitdiff
2015-06-10 tcofoegbuupdated build.xml tree | commitdiff
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-10 gmungocMerge remote-tracking branch tree | commitdiff
2015-06-10 tcofoegbuJAL-1641 updated applet version tree | commitdiff
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries... tree | commitdiff
2015-06-10 Jim ProcterJAL-1764 add structure view type attribute to project... schema/JAL-1764_structureViewAttribute tree | commitdiff
2015-06-09 tcofoegbuJAL-1488 bug-fix for incorrect start/end position in... tree | commitdiff
2015-06-07 Jim ProcterJAL-429 remove pointless code from phylip parser features/JAL-653_rebased_gffalignments tree | commitdiff
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format... tree | commitdiff
2015-06-07 Jim ProcterJAL-653 basic GFF3 alignment import wrapper class tree | commitdiff
2015-06-06 Jim ProcterJAL-653 make sure dummy sequences created during GFF... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 first stab at parsing GFF3 pragmas to support... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 gff version number field tree | commitdiff
2015-06-06 Jim ProcterJAL-653 missing imports after rebase tree | commitdiff
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes... tree | commitdiff
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into... tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments tree | commitdiff
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed... tree | commitdiff
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... tree | commitdiff
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on... tree | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... tree | commitdiff
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta... tree | commitdiff
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional... tree | commitdiff
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ... tree | commitdiff
2015-06-05 gmungocJAL-1622 code tidy only, no functional change tree | commitdiff
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret... tree | commitdiff
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES tree | commitdiff
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute... tree | commitdiff
2015-06-05 Jim ProcterJAL-1115 JAL-653 partial introduction of List interface... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc... tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code... tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-04 gmungocClear status bar message when initialisation complete tree | commitdiff
2015-06-04 gmungocJAL-1750 small tidy of AlignSeq.printMapping (+Junit) tree | commitdiff
2015-06-04 gmungocJAL-1544 spelling in javadoc only tree | commitdiff
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() tree | commitdiff
2015-06-04 gmungocJAL-1747 close all windows on Quit (+small bug fix) tree | commitdiff
2015-06-04 gmungoctoString method added to aid viewing in the debugger tree | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... tree | commitdiff
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' tree | commitdiff
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated tree | commitdiff
2015-06-04 gmungocJAL-1753 statusPanel added (for ProgressBar); 'Fit... tree | commitdiff
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar tree | commitdiff
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... tree | commitdiff
2015-06-04 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... tree | commitdiff
2015-06-04 tcofoegbuJAL-1756 bug-fix tree | commitdiff
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix tree | commitdiff
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package tree | commitdiff
2015-06-01 tcofoegbuJAL-1703 added tooltip hints to components of the Selec... tree | commitdiff
2015-06-01 tcofoegbuJAL-1734 updated progress bar messages tree | commitdiff
2015-05-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 tcofoegbuJAL-1748 house keeping tree | commitdiff
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 gmungocJAL-1753 declare field with interface type; check for... tree | commitdiff
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