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JAL-2780 JAL-2781 extra column in mapping array
[jalview.git] / src / jalview /
2018-02-12 Jim ProcterJAL-2780 JAL-2781 ahem - add a semicolon if there isn... tree | commitdiff
2018-02-11 Jim ProcterJAL-2781 use SIFTs mapping rather than maxChain AlignSe... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 use PDBe numbering to map between... tree | commitdiff
2018-02-11 Jim ProcterJAL-2781 mark aligned positions via StructureMapping... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 include a Mapping object in Structure... tree | commitdiff
2018-02-11 Jim ProcterJAL-2780 JAL-2781 UNASSIGNED positions marked as Intege... tree | commitdiff
2018-02-09 Jim ProcterUse the “PDBe” or “PDB” numbering (starts from 1, corre... tree | commitdiff
2018-02-09 Jim ProcterJAL-2780 JAL-2781 should always ensure SIFTS mappings... tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore... tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 thread off dialog close op to avoid deadlock... tree | commitdiff
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 fix javadoc in line with behaviour... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 don’t assume contiguous mapping to... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... tree | commitdiff
2018-01-18 gmungocJAL-2810 JAL-2886 i18n tree | commitdiff
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... tree | commitdiff
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... tree | commitdiff
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... tree | commitdiff
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
 tree | commitdiff
2017-11-30 Jim ProcterJAL-2849 fix tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop tree | commitdiff
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop tree | commitdiff
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid tree | commitdiff
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 tree | commitdiff
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling tree | commitdiff
2017-11-17 Jim ProcterJAL-2698 source code licencing tree | commitdiff
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in... tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2784' into develop tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2821' into develop tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2837' into develop tree | commitdiff
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837 tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation... tree | commitdiff
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop tree | commitdiff
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... tree | commitdiff
2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks bug/JAL-2831 tree | commitdiff
2017-11-16 kiramtJAL-2842 remove infinite loop in cursor move bug/JAL-2842 tree | commitdiff
2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region tree | commitdiff
2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 tree | commitdiff
2017-11-15 kiramtJAL-2811 Updated following review bug/JAL-2811 tree | commitdiff
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at... tree | commitdiff
2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode... tree | commitdiff
2017-11-15 kiramtJAL-2831 ported to applet tree | commitdiff
2017-11-14 kiramtJAL-2831 tidies and tests tree | commitdiff
2017-11-14 kiramtJAL-2831 tidy tree | commitdiff
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 tree | commitdiff
2017-11-14 kiramtJAL-2811 Changed to overlay on via graphics context... tree | commitdiff
2017-11-14 kiramtJAL-2811 Missed commit tree | commitdiff
2017-11-14 kiramtJAL-2811 Made it work for hidden columns/seqs too tree | commitdiff
2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode tree | commitdiff
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 tree | commitdiff
2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor... tree | commitdiff
2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor... tree | commitdiff
2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831 tree | commitdiff
2017-11-13 kiramtJAL-2811 Tidy tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into... tree | commitdiff
2017-11-13 Jim ProcterJAL-2758 remove configurable behaviour - Uniprot sequen... tree | commitdiff
2017-11-13 Jim ProcterJAL-2758 typo tree | commitdiff
2017-11-13 kiramtJAl-2811 Working for wrapped panels too tree | commitdiff
2017-11-13 kiramtJAL-2811 Add layer for cursor in SeqCanvas tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'imp/JAL-2810_ftsIDtab' into develop tree | commitdiff
2017-11-13 gmungocJAL-2176 removed unused Sequence.index tree | commitdiff
2017-11-13 kiramtJAL-2784 new checks for gg==null bug/JAL-2784 tree | commitdiff
2017-11-13 Jim ProcterJAL-2810 auto search checkbox state stored as user... tree | commitdiff
2017-11-13 gmungocJAL-2679 example accession changed to CAD01290 tree | commitdiff
2017-11-13 Jim ProcterJAL-2810 mainFramTabs -> tabs tree | commitdiff
2017-11-10 Jim ProcterJAL-2828 allow CalcId to match on String equivalence... doc/JAL-2494_JAL-2828_mergefindAnnotation tree | commitdiff
2017-11-10 Jim ProcterJAL-2828 refactored duplicate code for searching lists... tree | commitdiff
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps tree | commitdiff
2017-11-10 gmungocJAL-2562 updated findPosition javadoc to match behaviour tree | commitdiff
2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annot... bug/JAL-2827 tree | commitdiff
2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when... tree | commitdiff
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains tree | commitdiff
2017-11-07 Jim ProcterMerge branch 'imp/JAL-2775' into develop tree | commitdiff
2017-11-07 Jim ProcterJAL-2810 i18n tab label tree | commitdiff
2017-11-07 kiramtJAL-2774 Added javadoc for new event parameters imp/JAL-2774 tree | commitdiff
2017-11-07 Jim ProcterJAL-2810 ‘Close’ is now ‘Cancel’ in SequenceFetcher... tree | commitdiff
2017-11-07 Jim ProcterJAL-2810 working back button shown for bulk ID retrieva... tree | commitdiff
2017-11-07 kiramtJAL-2774 Fix fastpaint of wrapped alignment tree | commitdiff
2017-11-07 kiramtJAL-2821 refactored drawPartialGroupOutline bug/JAL-2821 tree | commitdiff
2017-11-07 Jim ProcterJAL-2810 bulk fetch for PDB IDs tree | commitdiff
2017-11-01 kiramtMerge branch 'develop' into imp/JAL-2775 imp/JAL-2775 tree | commitdiff
2017-10-31 kiramtJAL-2774 Fix repaint artefacts tree | commitdiff
2017-10-31 kiramtJAL-2774 Fixed merge issues tree | commitdiff
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-10-31 Jim ProcterJAL-2810 checkbox label for Autosearch tree | commitdiff
2017-10-31 Jim ProcterJAL-2810 default border colour tree | commitdiff
2017-10-31 kiramtJAL-2756 update for new EBI https link tree | commitdiff
2017-10-27 Jim ProcterJAL-2810 prototype retrieve ID tab for the Uniprot... tree | commitdiff
2017-10-27 Jim ProcterJAL-2804 update search results when enter pressed or... tree | commitdiff
2017-10-27 Jim ProcterJAL-2804 checkbox to enable/disable auto search (with... tree | commitdiff
2017-10-27 Jim ProcterJAL-2804 kludge method to test if last key event handle... tree | commitdiff
2017-10-27 gmungocJAL-2526 updated javadoc tree | commitdiff
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover... tree | commitdiff
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop tree | commitdiff
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