JAL-1805 typo corrected
[jalview.git] / src / jalview /
2015-09-18 gmungocJAL-1859 reinstated full path to file option (for local...
2015-09-17 tcofoegbuJAL-1774 bugfix for misleading message after trying...
2015-09-16 tcofoegbumerge
2015-09-16 tcofoegbuJAL-1486 off-by-one error bugfix
2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with membe...
2015-09-16 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus...
2015-09-16 tcofoegbumerge
2015-09-16 tcofoegbuJAL-1881 Bugfix for annotation import from BioJS
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils...
2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option
2015-09-16 gmungocJAL-1859 debug logging removed
2015-09-16 gmungocJAL-1859 revert to resolving full path to PDB file
2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as...
2015-09-16 gmungocJAL-1859 temporary debug output
2015-09-15 gmungocJAL-1859 use unresolved PDB filename
2015-09-15 gmungocJAL-1859 strip file name from applet documentbase
2015-09-15 gmungocJAL-1859 refactoring / debugging added
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match...
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence...
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference...
2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence
2015-09-09 gmungocJAL-857 added debug output to track down document base...
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped...
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true...
2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs)
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as...
2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-07 tcofoegbumerge
2015-09-07 tcofoegbuJAL-1831 updated BioJSON schema
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef...
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the...
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in...
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour...
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati...
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit...
2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when...
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time...
2015-09-05 Jim ProcterMerge branch 'bugfix/JAL-841_JAL-1081' into develop
2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in...
2015-09-05 Jim ProcterJAL-1081 JAL-891 don’t overwrite global colour scheme...
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection...
2015-09-04 Jim ProcterJAL-1847 Merge branch 'thiago' into develop
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be...
2015-09-04 tcofoegbuJAL-793 added ability to visualise raw BioJSON in the...
2015-09-03 Jim ProcterJAL-1863 allow RNA secondary structure rows exported...
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates...
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens...
2015-09-03 Jim ProcterJAL-1576 fix: trigger broadcast of colour change with...
2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting...
2015-09-03 Jim ProcterJAL-1551 source tidy
2015-09-03 Jim ProcterJAL-1550 JAL-1551 formatting
2015-09-03 Jim ProcterJAL-1233 JAL-1576 copy constructor to propagate helix...
2015-09-03 tcofoegbuhouse keeping
2015-09-03 tcofoegbumerge
2015-09-03 tcofoegbuJAL-1861 disable the action buttons for 1500 millisec...
2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not...
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute...
2015-09-03 tcofoegbumerge
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html...
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin...
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-02 tcofoegbuJAL-1740 migrated BioJSMSAViewer git repo to https...
2015-09-02 tcofoegbumerge
2015-09-02 tcofoegbuJAL-1739 reverted BioJSON schema to use one main versio...
2015-09-02 gmungocJAL-1544 spelling
2015-09-02 gmungocJAL-1355 User error text externalised to message bundle
2015-09-02 gmungocJAL-1768 set initial 'enabled' state for id width label...
2015-09-02 gmungocJAL-1768 enable fixed width output when auto-width...
2015-09-02 gmungocJAL-1843 fixed input/add from textbox; added @Override...
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-02 Jim ProcterJAL-535 todo: refactor logic to desktop controller...
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-01 Jim ProcterMerge branch 'bug/JAL-1853_gapchar_output' into develop
2015-09-01 Jim ProcterJAL-1853 make getVisibleSeqs more memory efficient...
2015-09-01 Jim ProcterJAL-1853 refactor clip routine from getSequenceStrings
2015-09-01 Jim Procterpatch for JAL-1853 - use given gap character to reconst...
2015-09-01 gmungocJAL-1355 user error message text externalised
2015-09-01 tcofoegbuJAL-1668 house keeping
2015-08-31 tcofoegbumerge
2015-08-31 tcofoegbuJAL-1700 updated error handling with suggested improvem...
2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns...
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from...
2015-08-27 gmungocJAL-845 compacting duplicated code
2015-08-27 gmungocJAL-1611 debug sysout suppressed
2015-08-27 gmungocJAL-1544 message label corrected
2015-08-27 gmungocJAL-1725 restrict Jalview's Jetty server to localhost
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead...
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