JAL-3187 findFeaturesAtResidue answer in render order (tests TODO)
[jalview.git] / src / jalview /
2018-06-04 gmungocJAL-3018 updated REST versions to 6.3
2018-06-04 Jim ProcterJAL-3017 parse multiple variant elements for uniprot...
2018-06-02 Jim ProcterJAL-3017 parse multiple variant elements for uniprot...
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min...
2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases...
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea...
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into...
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows
2018-05-25 Jim ProcterJAL-1460 javadoc
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
2018-05-24 gmungocJAL-2997 additional tests
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and...
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when...
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces...
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797
2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature
2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue...
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into...
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for...
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure...
2018-05-09 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into...
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented...
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’
2018-05-07 Jim ProcterJAL-2321 use configured values for structure derived...
2018-05-07 Jim ProcterJAL-2321 add secondary structure & temp factor if not...
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings...
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method...
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi...
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-05-07 gmungocJAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject
2018-05-07 gmungocJAL-1767 scheme DoubleMatrix type includes D and E...
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source
2018-05-07 gmungocJAL-2982 use configured background colour in PCA image...
2018-05-07 gmungocJAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...
2018-05-07 gmungocJAL-1767 save PCA D and E vectors instead of 'details...
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin...
2018-05-04 gmungocJAL-2975 Shift-arrow keys to rotate PCA incrementally
2018-05-04 gmungocJAL-1767 schema and Castor changes for Save PCA in...
2018-05-04 gmungocJAL-2965 graduate brightness on z-axis from centre...
2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of...
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available...
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur...
2018-05-02 gmungocJAL-1767 getters/setters for D and E vectors
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work...
2018-05-01 gmungocJAL-1767 include d and e vectors in Matrix.copy()
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou...
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-04-30 gmungocJAL-2965 graduated sequence point colour from back...
2018-04-27 gmungocJAL-2964 tree@linkToAllViews attribute added to project...
2018-04-27 gmungocJAL-2963 correctly dim PCA points with negative z-coord...
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas...
2018-04-26 gmungocJAL-2962 rename run method (as not a Runnable)
2018-04-26 gmungocJAL-2962 remove Change Parameters menu from PCA panel
2018-04-26 gmungocJAL-2962 option to offer BLOSUM62 for nucleotide PCA
2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional...
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte...
2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelecte... features/JAL-2944_openStructuresInSelectedView
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec...
2018-04-12 gmungocJAL-1847 minor post-review updates
2018-04-12 gmungocJAL-2944 tidies for review comments
2018-04-11 Jim ProcterJAL-2946 catch unexpected SIFTS mapping exceptions...
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather...
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl...
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify...
2018-04-05 Jim ProcterJAL-2945 provide access to last highlighted results
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a...
2018-04-05 Jim ProcterJAL-2944 combo box to pick which viewer to load structu...
2018-04-05 Jim ProcterJAL-2944 methods to check existence and get a title...
2018-04-05 Jim ProcterJAL-2944 allow StructureViewer proxy to be created...
2018-04-05 Jim ProcterJAL-2944 get viewer’s title via toString()
2018-04-05 Jim ProcterJAL-2944 expose UI update methods in api
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods...
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine...
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-21 Jim ProcterMerge branch 'patch/JAL-2754_patch2104forJava8' into...
2018-03-21 Jim ProcterJAL-2754 fix eclipse compilation error about referencin...
2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGe...
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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