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Merge branch 'task/JAL-3597memoryLeakTest' into develop
[jalview.git]
/
src
/
jalview
/
2019-06-13
gmungoc
JAL-3143 recognise lnc_RNA as transcript
tree
|
commitdiff
2019-06-12
Ben Soares
JAL-3295 Fixed CMD-select of sequences in alignment...
tree
|
commitdiff
2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-11
gmungoc
JAL-3143 also parse "phase" from JSON response if present
tree
|
commitdiff
2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-11
gmungoc
JAL-3288 fixes for gain/lose focus
tree
|
commitdiff
2019-06-11
gmungoc
JAL-3187 CDS has same dataset sequence as transcript
tree
|
commitdiff
2019-06-10
gmungoc
JAL-3296 ensure sequence cursor reset when sequence...
bug/JAL-3296changeStartInvalidateCursor
tree
|
commitdiff
2019-06-07
gmungoc
JAL-3187 save and restore flags for show complement...
tree
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commitdiff
2019-06-07
gmungoc
JAL-3187 change fields to local variables
tree
|
commitdiff
2019-06-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-07
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
tree
|
commitdiff
2019-06-07
gmungoc
JAL-3187 Viewport schema attributes for showComplementF...
tree
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commitdiff
2019-06-07
gmungoc
JAL-3251 added optional attributes Sequence.biotype...
tree
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commitdiff
2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
tree
|
commitdiff
2019-06-06
gmungoc
JAL-3187 deletions (of Castor code) after merge from...
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-06-05
gmungoc
JAL-3288 override JInternalFrame.setSelected() to avoid...
bug/JAL-3288splitFrameMenusJava11
tree
|
commitdiff
2019-06-04
gmungoc
JAL-2386 avoid duplicate pdbids in free text query
bug/JAL-3286duplicatePdbQuery
tree
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commitdiff
2019-05-31
Ben Soares
JAL-3247 Adjusted Uninstall Old Jalview.app to just...
tree
|
commitdiff
2019-05-29
gmungoc
JAL-2738 error logging if no ##reference found
tree
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commitdiff
2019-05-29
gmungoc
JAL-2738 accept .csi, default to GRCh37:homo_sapiens...
tree
|
commitdiff
2019-05-28
Ben Soares
JAL-1988 Some TEST code accidentally left in now remove...
tree
|
commitdiff
2019-05-27
Ben Soares
JAL-3141 Added HashMap types for Java 1.8 compatibility
tree
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commitdiff
2019-05-27
Ben Soares
Merge branch 'task/JAL-3141_Customise_checkbox' into...
tree
|
commitdiff
2019-05-27
Ben Soares
JAL-3141 Object array cast missing
tree
|
commitdiff
2019-05-27
Ben Soares
Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
tree
|
commitdiff
2019-05-27
Ben Soares
JAL-3141 Generified the JvUtils.buildComboWithTooltips...
tree
|
commitdiff
2019-05-25
Ben Soares
JAL-3141 One more error log fix
tree
|
commitdiff
2019-05-25
Ben Soares
JAL-3141 Added tooltips on Schemes dropdown and Customi...
tree
|
commitdiff
2019-05-24
Ben Soares
JAL-3141 Fixes recommended from gmc's test
tree
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Fixed vertical size of the example filenames...
tree
|
commitdiff
2019-05-24
Ben Soares
JAL-3141 Reworked a lot of BackupFiles to allow the...
tree
|
commitdiff
2019-05-22
Jim Procter
JAL-3274 import build properties and authors resources...
Jalview-JS/tasks/JAL-3274-build_details
tree
|
commitdiff
2019-05-22
Ben Soares
Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
tree
|
commitdiff
2019-05-21
Ben Soares
JAL-3247 Launcher start improvements. RPM and DEB no...
tree
|
commitdiff
2019-05-20
Ben Soares
JAL-3254 Improved memory setting (allows mem for OS...
tree
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commitdiff
2019-05-06
gmungoc
JAL-3239 release note
tree
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commitdiff
2019-05-06
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3239monosp...
tree
|
commitdiff
2019-05-06
gmungoc
JAL-3244 delete obsolete method
tree
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commitdiff
2019-05-02
gmungoc
JAL-3239 draw EPS or SVG one character at a time (even...
bug/JAL-3239monospacedEps
tree
|
commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
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commitdiff
2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
tree
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commitdiff
2019-04-30
gmungoc
JAL-3241 simplified enum constructors for classloadabil...
tree
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commitdiff
2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
tree
|
commitdiff
2019-04-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2019-04-26
gmungoc
JAL-2743 class Javadoc
tree
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commitdiff
2019-04-26
gmungoc
JAL-2738 JAL-2743 properties to map VCF header to speci...
tree
|
commitdiff
2019-04-26
Ben Soares
JAL-3233 Added isAMac check for -Xdock:icon addition...
tree
|
commitdiff
2019-04-26
gmungoc
JAL-3010 borderless 'x' for "delete this filter condition"
tree
|
commitdiff
2019-04-26
gmungoc
JAL-2808 better tooltip 'delete this condition'
tree
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commitdiff
2019-04-26
gmungoc
JAL-3226 removal of superseded changes
tree
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commitdiff
2019-04-26
gmungoc
JAL-3010 borderless 'x' for "delete this filter condition"
tree
|
commitdiff
2019-04-25
Ben Soares
JAL-3224 JAL-3225 Some fixes in install4j template...
tree
|
commitdiff
2019-04-25
Ben Soares
JAL-3224 JAL-3225 Added lines to check for updates...
tree
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commitdiff
2019-04-24
Jim Procter
Merge branch 'task/JAL-3225_Integration_Gradle_building...
tree
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commitdiff
2019-04-23
Jim Procter
Merge branch 'develop' into bug/JAL-3224_getdown_change...
tree
|
commitdiff
2019-04-23
hansonr
[JAL-3226] problem that JavaScript (or Java) may consol...
tree
|
commitdiff
2019-04-20
gmungoc
JAL-2791 tailored message if find fails on selection...
tree
|
commitdiff
2019-04-18
hansonr
minor code clean up
tree
|
commitdiff
2019-04-18
hansonr
minor code clean up
tree
|
commitdiff
2019-04-18
hansonr
// BH 2018.04.18 comment: addNotify() is not appropriat...
tree
|
commitdiff
2019-04-18
hansonr
Adds check for gap padding to disallow fast paint upon...
tree
|
commitdiff
2019-04-18
hansonr
removes unnecessary clearFastPaint
tree
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commitdiff
2019-04-18
hansonr
Corrects incorrect calls to ViewportRanges.setEndSeq()
tree
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commitdiff
2019-04-18
hansonr
pushing again, just comments
tree
|
commitdiff
2019-04-18
hansonr
hack for fastpaint Java bug upshifting one line after...
tree
|
commitdiff
2019-04-18
hansonr
reverting seqPanel.seqCanvas.clearFastPaint();
tree
|
commitdiff
2019-04-18
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
|
commitdiff
2019-04-18
gmungoc
JAL-3193 dbSource always "ENSEMBL"
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
tree
|
commitdiff
2019-04-18
hansonr
adds an explicit clearing of the SeqCanvas fastPaint...
tree
|
commitdiff
2019-04-17
gmungoc
JAL-3026 fix bug loading Jalview Project (in Java)
tree
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commitdiff
2019-04-17
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-04-16
hansonr
caching of DnD files dropped
tree
|
commitdiff
2019-04-16
hansonr
localizes Thread colourby so that it does not cause...
tree
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commitdiff
2019-04-16
hansonr
comments only
tree
|
commitdiff
2019-04-16
hansonr
missing check for JavaScript in client response for...
tree
|
commitdiff
2019-04-16
gmungoc
Merge branch 'bug/JAL-3218scalePanelPopups' into develop
tree
|
commitdiff
2019-04-15
Ben Soares
JAL-3130 Helper classes to take Class Exceptions when...
tree
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commitdiff
2019-04-15
gmungoc
JAL-3193 no separatge EnsemblGenomes source in Sequence...
tree
|
commitdiff
2019-04-15
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
tree
|
commitdiff
2019-04-10
gmungoc
JAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
tree
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commitdiff
2019-04-10
gmungoc
JAL-3018 REST version updated to 10.0
tree
|
commitdiff
2019-04-09
hansonr
better comment regarding setting recognized ajax-enable...
tree
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commitdiff
2019-04-09
hansonr
code formatting only
tree
|
commitdiff
2019-04-05
hansonr
File caching activated explicitly in Platform
tree
|
commitdiff
2019-04-05
hansonr
command line fix
tree
|
commitdiff
2019-04-05
Ben Soares
JAL-3130 This commit concentrates on the Mac OS X DMG...
tree
|
commitdiff
2019-04-05
hansonr
Merge branch 'Jalview-JS/develop' of https://source...
tree
|
commitdiff
2019-04-05
hansonr
fixes for Jalview command-line URI code
tree
|
commitdiff
2019-04-05
gmungoc
JAL-3204 update to uniprot schema
tree
|
commitdiff
2019-04-04
hansonr
Merge branch 'Jalview-JS/develop' of https://source...
tree
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commitdiff
2019-04-04
hansonr
j2sNative cleanup; fix for JTextArea preferred height...
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on 3 more main methods
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 unneeded main methods removed
tree
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commitdiff
2019-04-04
Ben Soares
JAL-3130 trying to be Java 1.8 source compatible -...
tree
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commitdiff
next