2017-09-28 |
gmungoc | JAL-2036 set menus after fully loading AlignFrame |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-1796 GeneLociI as distinguished DBRefEntry |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-2744 simple Feature Details report from Popup menu |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-2744 refactor PopupMenu constructor to enable addin... |
tree | commitdiff |
2017-09-26 |
kiramt | JAL-2742 fixed |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 transfer VCF variant features to CDS sequences |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 JAL-2154 add DBRef from transcript to synthesi... |
tree | commitdiff |
2017-09-26 |
kiramt | JAL-2740 removed unwanted code, added unit test |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 unit test for reverse strand gene |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 promote setGeneLoci to SequenceI! |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 use complement base for a VCF variant on rever... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 getGeneLoci promoted to SequenceI |
tree | commitdiff |
2017-09-25 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2525 return no features if none matches ontology... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 query unindexed file, unit test for VCFLoader |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 one constant in codebase for "alleles" attribu... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 extract SNP variants from SNP or MIXED variant... |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 extract utility method to MappingUtils |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 correct handling of reverse strand genes |
tree | commitdiff |
2017-09-22 |
kiramt | JAL-2739 Fix ported to 2.10.3 |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 lookup GRCh38/37 gene mapping |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 compute VCF on peptide, extract AF (allele... |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 add chromosome coordinate mappings to transcripts |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 PoC of Load VCF file on to gene sequence |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 GeneLoci holds mapping of sequence to chromosome |
tree | commitdiff |
2017-09-19 |
gmungoc | JAL-1793 wrapper for plain or indexed VCF + simple... |
tree | commitdiff |
2017-09-18 |
gmungoc | Merge remote-tracking branch 'origin/patch/JAL-2732... |
tree | commitdiff |
2017-09-18 |
gmungoc | JAL-2728 fine tuned initial split of split frame view |
tree | commitdiff |
2017-09-15 |
Jim Procter | JAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732 |
tree | commitdiff |
2017-09-15 |
Jim Procter | JAL-1625 javadoc |
tree | commitdiff |
2017-09-15 |
Jim Procter | JAL-2733 redraw after changing the memory status displa... |
tree | commitdiff |
2017-09-15 |
Jim Procter | JAL-1625 JAL-1900 preserve the original DesktopManager... |
tree | commitdiff |
2017-09-15 |
Jim Procter | JAL-1900 JAL-1625 back out OSX specific double buffer... |
tree | commitdiff |
2017-09-15 |
Jim Procter | JAL-1551 standard code formatting |
tree | commitdiff |
2017-09-15 |
Jim Procter | JAL-2732 force a redraw after resize/drag to clear... |
tree | commitdiff |
2017-09-15 |
gmungoc | JAL-2728 use right denominator for min/max ratio calcul... bug/JAL-2728splitFrameDivision |
tree | commitdiff |
2017-09-15 |
gmungoc | JAL-2728 limit divider to ensure seqs visible (wip!) |
tree | commitdiff |
2017-09-15 |
gmungoc | JAL-741 add tooltip to feature group checkbox |
tree | commitdiff |
2017-09-14 |
gmungoc | JAL-2727 null more fields in AlignmentViewport.dispose... |
tree | commitdiff |
2017-09-14 |
gmungoc | JAL-2727 method to check if PCAPanel thread is working |
tree | commitdiff |
2017-09-13 |
gmungoc | JAL-2727 null additional references on close |
tree | commitdiff |
2017-09-12 |
gmungoc | Merge branch 'bug/JAL-2721fastPaintNPE' into develop |
tree | commitdiff |
2017-09-12 |
gmungoc | Revert "JAL-2727 null hconsensus, " |
tree | commitdiff |
2017-09-12 |
gmungoc | JAL-2727 null hconsensus, |
tree | commitdiff |
2017-09-12 |
gmungoc | JAL-2727 ensure ViewportRanges (and gapcounts) are... |
tree | commitdiff |
2017-09-07 |
gmungoc | JAL-2511 invalidate scale panel holder on font change... |
tree | commitdiff |
2017-09-07 |
gmungoc | JAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment |
tree | commitdiff |
2017-09-06 |
Jim Procter | JAL-2587 makes sure idWidthAdjuster is resized when... |
tree | commitdiff |
2017-09-06 |
Jim Procter | JAL-2587 makes sure idWidthAdjuster is resized when... |
tree | commitdiff |
2017-09-06 |
gmungoc | JAL-2721 no fastPaint if img has been nulled by fontCha... |
tree | commitdiff |
2017-09-06 |
gmungoc | JAL-2721 no fastPaint if img has been nulled by fontCha... bug/JAL-2721fastPaintNPE |
tree | commitdiff |
2017-09-06 |
Jim Procter | Merge branch 'feature/JAL-2587' into releases/Release_2... |
tree | commitdiff |
2017-09-06 |
Jim Procter | Merge branch 'releases/Release_2_10_2b1_Branch' into... |
tree | commitdiff |
2017-09-06 |
Jim Procter | JAL-2724 patch to fix ClassCastException - method shoul... |
tree | commitdiff |
2017-09-06 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-2722'... portforward/JAL-2675_2102b1to2103 |
tree | commitdiff |
2017-09-06 |
kiramt | JAL-2587 Removed dissolve |
tree | commitdiff |
2017-09-05 |
gmungoc | JAL-2665 check for null selection group image |
tree | commitdiff |
2017-09-05 |
Jim Procter | Merge branch 'bug/JAL-2722' into releases/Release_2_10_... |
tree | commitdiff |
2017-09-05 |
gmungoc | JAL-2665 check for null selection group image |
tree | commitdiff |
2017-09-05 |
kiramt | JAL-2722 Reinstate allGroups value setting in getResidu... |
tree | commitdiff |
2017-09-05 |
Jim Procter | Merge branch 'bug/JAL-2665-2.10.3' into portforward... |
tree | commitdiff |
2017-09-05 |
Jim Procter | Merge branch 'master' into portforward/JAL-2675_2102b1t... |
tree | commitdiff |
2017-09-05 |
gmungoc | JAL-2225 unused collateForPdb removed |
tree | commitdiff |
2017-09-05 |
gmungoc | JAL-2225 fix bug in collating unique pdb files and... |
tree | commitdiff |
2017-09-04 |
Jim Procter | JAL-2675 source license |
tree | commitdiff |
2017-09-04 |
Jim Procter | Merge branch 'feature/JAL-2587' into documentation... |
tree | commitdiff |
2017-09-04 |
Jim Procter | Merge branch 'bug/JAL-2673' into documentation/JAL... |
tree | commitdiff |
2017-09-04 |
kiramt | JAL-2673 turn off update to running flag from scrollUp... bug/JAL-2673 |
tree | commitdiff |
2017-09-04 |
kiramt | JAL-2673 Attempt to stop infinite scrolling etc |
tree | commitdiff |
2017-09-04 |
Jim Procter | JAL-2527 move default colours for applet / application... |
tree | commitdiff |
2017-09-04 |
Jim Procter | Merge branch 'bug/JAL-2704gapColourFading' into documen... |
tree | commitdiff |
2017-09-04 |
Jim Procter | Merge branch 'releases/Release_2_10_2b1_Branch' of... |
tree | commitdiff |
2017-09-04 |
gmungoc | JAL-2617 unit tests for CDS + stop codon, CDS with... bug/JAL-2617mappedStopCodon |
tree | commitdiff |
2017-09-04 |
kiramt | JAL-2611 reinstated missed commit |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'feature/JAL-2587' into documentation... |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'bug/JAL-2691_nomultimermapping' into... |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'bug/JAL-2665-2.10.2b' into documentation... bug/JAL-2673_mergewithproblem |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'documentation/JAL-2675_release2102b1... |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'feature/JAL-2527' into documentation... |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'features/JAL-2681_duplicatecrossrefs... |
tree | commitdiff |
2017-09-01 |
gmungoc | JAL-2617 omit stop codon from synthesized CDS sequence |
tree | commitdiff |
2017-09-01 |
gmungoc | JAL-2216 remove alignment listener when Tree Panel... |
tree | commitdiff |
2017-09-01 |
gmungoc | JAL-2488 remove finalize methods |
tree | commitdiff |
2017-08-31 |
kiramt | JAL-2527 Updated Spanish, adjusted UI so Spanish fits |
tree | commitdiff |
2017-08-31 |
kiramt | JAL-2527 Updates following code review |
tree | commitdiff |
2017-08-31 |
gmungoc | JAL-2105 REST versions updated to 6.1 (Ensembl) 6.0... |
tree | commitdiff |
2017-08-31 |
gmungoc | JAL-2253 safer simpler resolution of identifiers using... |
tree | commitdiff |
2017-08-31 |
gmungoc | JAL-2704 unit test for Above PID gap colour, simplified... bug/JAL-2704gapColourFading |
tree | commitdiff |
2017-08-30 |
gmungoc | JAL-2704 don't shade gap colour for PID/conservation |
tree | commitdiff |
2017-08-30 |
gmungoc | JAL-2685 score matrix in sysout formatted with sequence... |
tree | commitdiff |
2017-08-30 |
kiramt | JAL-2527 Code comments, tidy |
tree | commitdiff |
2017-08-30 |
kiramt | JAL-2527 Added default setting/resetting and first... |
tree | commitdiff |
2017-08-30 |
gmungoc | JAL-2685 tweaks to output spacing, updated TestAlignSeq... |
tree | commitdiff |
2017-08-30 |
gmungoc | JAL-2685 use actual selection for report of pairwise... |
tree | commitdiff |
2017-08-30 |
kiramt | JAL-2527 Wired up cached values to overview |
tree | commitdiff |
2017-08-30 |
kiramt | Merge remote-tracking branch 'origin/feature/2588'... |
tree | commitdiff |
2017-08-30 |
kiramt | Merge branch 'feature/JAL-2664' into feature/JAL-2527 |
tree | commitdiff |
2017-08-30 |
kiramt | JAL-2587 Removed dissolve feature/JAL-2587 |
tree | commitdiff |
2017-08-29 |
kiramt | JAL-2664 Updates following review feature/JAL-2664 |
tree | commitdiff |
2017-08-29 |
kiramt | JAL-2527 Added overview prefs - don't get picked up... |
tree | commitdiff |
next |