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JAL-1759 formatting
[jalview.git] / src / jalview /
2015-07-23 Jim ProcterJAL-1759 formatting tree | commitdiff
2015-07-10 tcofoegbuJAL-1759 code fix to enable testng ant task compile... tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate tree | commitdiff
2015-07-01 gmungocJAL-1799 deduct more space for decorators on Windows tree | commitdiff
2015-07-01 gmungocJAL-1619 align the added sequences to match what they... tree | commitdiff
2015-06-30 gmungocJAL=1759 fix Jmol state command bug; remove debug output tree | commitdiff
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics tree | commitdiff
2015-06-30 gmungocJAL-1759 deprecated EnfinEnvision2OneWay removed tree | commitdiff
2015-06-30 gmungocJAL-1759 JMol now Jmol ! tree | commitdiff
2015-06-30 gmungocJAL-1759 unused field / methods removed tree | commitdiff
2015-06-30 tcofoegbuMerge branch 'features/JAL-1641_JSON-tests-and-docs... tree | commitdiff
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring tree | commitdiff
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even... tree | commitdiff
2015-06-29 gmungocJAL-1799 adjusted annotation height calculation tree | commitdiff
2015-06-29 gmungocJAL-1759 correct conversion of Jmol Chain.chainId ... tree | commitdiff
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor tree | commitdiff
2015-06-26 gmungocJAL-1759 changed to non-deprecated Viewer.renderScreenI... tree | commitdiff
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate tree | commitdiff
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 tree | commitdiff
2015-06-26 tcofoegbumerge tree | commitdiff
2015-06-26 tcofoegbuJAL-1780 improvement to ensure export settings dialog... tree | commitdiff
2015-06-25 Jim ProcterJAL-1691 avoid NPE when original split frame has been... tree | commitdiff
2015-06-25 Jim ProcterJAL-1780 JAL-653 JAL-1892 brackets in wrong place broke... tree | commitdiff
2015-06-24 Jim ProcterMerge branch 'features/JAL-1370_patchshowunconserved... tree | commitdiff
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation tree | commitdiff
2015-06-23 Jim ProcterJAL-1780 JAL-653 jim forgot to put the conditional... merge/develop_JAL-1780_JAL-653_JAL-1892 tree | commitdiff
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-22 gmungocJAL-892 tidy Varna panel names; JAL-1789 simplified... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-19 gmungocJAL-892 check viewer is linked to alignment panel on... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 minimise call rate now av.hasHiddenRow... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about... tree | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 javadoc for FeatureRenderer prior... tree | commitdiff
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... tree | commitdiff
2015-06-18 gmungocJAL-1544 typos in comments tree | commitdiff
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from... tree | commitdiff
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop tree | commitdiff
2015-06-18 gmungocJAL-892 schema changes (rnaViewer) for save Varna to... tree | commitdiff
2015-06-18 gmungocJAL-1781 annotation.sequenceRef now sequence id not... features/JAL-1781annotationXmlIds tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 minimise data duplication, and report out... tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export... tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 Export settings for flatfile output tree | commitdiff
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well tree | commitdiff
2015-06-17 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-17 gmungocJAL-1778 reinstated this.ssm to handle 'close all windo... tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo... tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null... tree | commitdiff
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports) tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e... tree | commitdiff
2015-06-15 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-15 gmungocJAL-1778 deregister as a listener when panel closed tree | commitdiff
2015-06-15 tcofoegbuJAL-1641 clean up tree | commitdiff
2015-06-15 tcofoegbuJAL-1641 docs for ComplexAlignFile interface tree | commitdiff
2015-06-15 tcofoegbuclean up tree | commitdiff
2015-06-12 tcofoegbuJAL-1627 removed extra spaces at end of tooltip tree | commitdiff
2015-06-12 tcofoegbuJAL-1641 refactor tree | commitdiff
2015-06-10 tcofoegbuupdated build.xml tree | commitdiff
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-10 gmungocMerge remote-tracking branch tree | commitdiff
2015-06-10 tcofoegbuJAL-1641 updated applet version tree | commitdiff
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries... tree | commitdiff
2015-06-10 Jim ProcterJAL-1764 add structure view type attribute to project... schema/JAL-1764_structureViewAttribute tree | commitdiff
2015-06-09 tcofoegbuJAL-1488 bug-fix for incorrect start/end position in... tree | commitdiff
2015-06-07 Jim ProcterJAL-429 remove pointless code from phylip parser features/JAL-653_rebased_gffalignments tree | commitdiff
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format... tree | commitdiff
2015-06-07 Jim ProcterJAL-653 basic GFF3 alignment import wrapper class tree | commitdiff
2015-06-06 Jim ProcterJAL-653 make sure dummy sequences created during GFF... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 first stab at parsing GFF3 pragmas to support... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 gff version number field tree | commitdiff
2015-06-06 Jim ProcterJAL-653 missing imports after rebase tree | commitdiff
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes... tree | commitdiff
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into... tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments tree | commitdiff
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed... tree | commitdiff
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... tree | commitdiff
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on... tree | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... tree | commitdiff
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta... tree | commitdiff
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional... tree | commitdiff
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ... tree | commitdiff
2015-06-05 gmungocJAL-1622 code tidy only, no functional change tree | commitdiff
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret... tree | commitdiff
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source... tree | commitdiff
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