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[jalview.git]
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src
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jalview
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2012-05-14
jprocter
JAL-1095 - todo
tree
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commitdiff
2012-05-14
jprocter
javadoc
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commitdiff
2012-05-11
jprocter
JAL-972 workaround for working out source URL for pre...
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commitdiff
2012-05-11
jprocter
formatting
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commitdiff
2012-05-11
jprocter
JAL-972 migration from dasobert to jdas registry URLs
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commitdiff
2012-05-11
jprocter
JAL-972 local do not have a coordsys element with sourc...
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commitdiff
2012-05-11
jprocter
JAL-424 TODO: new method signature for local source...
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commitdiff
2012-05-10
jprocter
JAL-1085 - ensure sequence fetching client waits around...
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commitdiff
2012-05-10
jprocter
JAL-972 JAL-1084 propagate reference to local authentic...
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commitdiff
2012-05-10
jprocter
JAL-1083 - graceful failover to single ID query mode...
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commitdiff
2012-05-10
jprocter
formatting
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commitdiff
2012-05-10
jprocter
JAL-1083 graceful failover to one ID per sequences...
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commitdiff
2012-05-10
jprocter
JAL-1075 better layout and info box for source browser
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commitdiff
2012-05-01
jprocter
JAL-1075 tweak layout and test display for tree based...
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commitdiff
2012-04-24
jprocter
JAL-1075, JAL-1061, JAL-1064 - introduced second tier...
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commitdiff
2012-04-24
jprocter
JAL-1064 sequence database sources are stored and retri...
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commitdiff
2012-04-24
jprocter
JAL-972 correct das registry default URL (JDAS automati...
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commitdiff
2012-04-24
jprocter
JAL-972 - test to distinguish sources based on age...
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commitdiff
2012-04-24
jprocter
JAL-1074 fix - missing tag indicating alignments are...
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commitdiff
2012-04-20
jprocter
JAL-972, JAL-1072 new default dasregistry.org registry...
tree
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commitdiff
2012-04-20
jprocter
JAL-1064 JAL-671 - add tree based database dialog as...
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commitdiff
2012-04-20
jprocter
JAL-1064 - hack to create menu item label for each...
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commitdiff
2012-04-20
jprocter
JAL-1064 - refactor to iterate over many sources associ...
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commitdiff
2012-04-20
jprocter
JAL-972 - correct name when constructing db-source...
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commitdiff
2012-04-20
jprocter
(JAL-1071) hacked the square matrix that stores the...
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commitdiff
2012-04-11
jprocter
dialog for browsing and selecting datasources hierarchi...
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commitdiff
2012-03-30
jprocter
JAL-1062 - recognise and split off the range qualifier...
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commitdiff
2012-03-30
jprocter
(JAL-972) format tweak for source information box
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commitdiff
2012-03-30
jprocter
Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
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commitdiff
2012-03-30
jprocter
logic bug
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commitdiff
2012-03-28
jprocter
JAL-1060 - prototype GUI with traffic light coding...
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commitdiff
2012-03-28
jprocter
JAL-1060 - record which services are invalid, valid...
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commitdiff
2012-03-27
jprocter
formatting
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commitdiff
2012-03-27
jprocter
JAL-976 - tweak web services gui so empty menus don...
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commitdiff
2012-03-27
jprocter
(JAL-976) - consistent ordering of services according...
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commitdiff
2012-03-27
jprocter
JAL-976 - hack to provide consistent ordering of JABAWS...
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commitdiff
2012-03-27
jprocter
(JAL-976) refactor JABAWS1 list
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commitdiff
2012-03-05
jprocter
(JAL-942) comment out non-functional buttons in VARNA
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commitdiff
2012-03-05
jprocter
(JAL-942) clearer view structure menu entry
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commitdiff
2012-03-05
jprocter
JAL-942 - sensible name on window
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commitdiff
2012-03-05
jprocter
JAL-942 - make sure rna structures get a sensible name
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commitdiff
2012-03-02
jprocter
(JAL-1052) todo for output of RNA consensus lines
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commitdiff
2012-03-02
jprocter
(JAL-1052) basic consensus line parsing to rna structur...
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commitdiff
2012-03-02
jprocter
(JAL-1052) make RNA secondary structure string parsing...
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commitdiff
2012-03-02
jprocter
formatting
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commitdiff
2012-03-02
jprocter
(JAL-942) more tweaking mapping between 2-struct and...
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commitdiff
2012-03-02
jprocter
(JAL-842) debug mouseover for sequences that don't...
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commitdiff
2012-03-02
jprocter
(JAL-842) todo
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commitdiff
2012-03-02
jprocter
remove unnecessary method
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commitdiff
2012-03-02
jprocter
efficiency, and ensure mouseover messages originating...
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commitdiff
2012-03-01
jprocter
(JAL-842) ensure deletions are accounted for when highl...
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commitdiff
2012-03-01
jprocter
(JAL-893) update to VARNAv3.9-dev version
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commitdiff
2012-03-01
jprocter
Merge branch 'Release_2_7_Branch' into develop
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commitdiff
2012-03-01
jprocter
debug local source management buttons and formatting
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commitdiff
2012-03-01
jprocter
revised version of Jdas with simpler connectionProperty...
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commitdiff
2012-02-29
jprocter
move from dasobert to jdas multithreaded feature fetchi...
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commitdiff
2012-02-29
jprocter
tidy imports and switch over to use das source registry API
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commitdiff
2012-02-29
jprocter
tidy imports
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commitdiff
2012-02-29
jprocter
fallout from refactoring registry datamodel to a source...
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commitdiff
2012-02-29
jprocter
(JAL-972) replaced biodas with jdas sources datastructu...
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commitdiff
2012-02-29
jprocter
refactoring dassequencesource code fallout
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commitdiff
2012-02-29
jprocter
refactored das sequence source creation code to the...
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commitdiff
2012-02-29
jprocter
removed excess imports
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commitdiff
2012-02-29
jprocter
updated das sequence source for jdas client and refacto...
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commitdiff
2012-02-29
jprocter
JAL-972 - refactored local source builder to registry...
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commitdiff
2012-02-29
jprocter
JAL-966 todo for jalview 3 api
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commitdiff
2012-02-29
jprocter
jalview das registry and source api and jdas specific...
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commitdiff
2012-02-29
jprocter
jdas doesn't need a listener for das sequence retrieval...
tree
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commitdiff
2012-02-13
jprocter
remove dead imports
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commitdiff
2012-02-13
jprocter
(JAL-972) jdas source retrieval and use of jdas structu...
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commitdiff
2012-02-13
jprocter
change over source attribute datamodel
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commitdiff
2012-02-13
jprocter
removed all dasobert code and begun to replace with...
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commitdiff
2012-02-12
Jim Procter
(JAL-1016) noted position where race condition occurs
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commitdiff
2012-02-12
Jim Procter
(JAL-1022) ensure all Jmol model filenames are normalis...
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commitdiff
2012-02-12
Jim Procter
(JAL-1022) reverted to original strategy of escaping...
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commitdiff
2012-02-12
Jim Procter
(JAL-1050) ensure all filenames passed in to the load...
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commitdiff
2012-02-12
Jim Procter
(JAL-1025 JAL-1022) File based equivalence used to...
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commitdiff
2012-02-12
Jim Procter
(JAL-1049) only store state reference for sequence...
tree
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commitdiff
2012-02-12
Jim Procter
JAL-1025 JAL-1022 use File based equivalence to map...
tree
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commitdiff
2012-02-12
Jim Procter
JAL-715 - remove platform dependent includes
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commitdiff
2011-12-14
jprocter
JAL-1033, JAL-1013 - ensure pca window shown only after...
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commitdiff
2011-12-14
jprocter
JAL-1013 - rename nucleotide and ensure current calcula...
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commitdiff
2011-12-13
jprocter
JAL-1013 - toy menu to switch between nucleotide and...
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commitdiff
2011-12-08
jprocter
(JAL-1013) specify sequence type to ensure PCA calculat...
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commitdiff
2011-12-08
jprocter
reorder fields to match application
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commitdiff
2011-12-08
jprocter
(JAL-1013) allow sequence type to be specified enabling...
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commitdiff
2011-12-08
jprocter
(JAL-1013) generalise binary sequence encoding scheme...
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commitdiff
2011-12-08
jprocter
(JAL-1013) gap character index for each sequence alphabet
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commitdiff
2011-12-08
jprocter
JAL-1027 fixed up nucleotide subt matrix so it is symme...
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commitdiff
2011-12-08
jprocter
(JAL-1023) ensure filename is properly escaped before...
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commitdiff
2011-12-08
jprocter
remove commented lines
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commitdiff
2011-12-08
jprocter
simple escape utility class for JAL-1023 patch
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commitdiff
2011-11-21
jprocter
Merge branch 'JAL-368_dragabovedesktop' into develop
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commitdiff
2011-11-21
jprocter
(JAL-368) ensure window never gets a negative Y coordin...
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commitdiff
2011-11-20
jprocter
Merge branch 'patch_JAL-1004' into develop
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commitdiff
2011-11-20
jprocter
(JAL-1004) add mouse listener to internal panel
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commitdiff
2011-11-15
jprocter
todo
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commitdiff
2011-11-14
jprocter
JAL-975 - ensure sequences are padded with gaps before...
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commitdiff
2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into JAL-976_jabaws...
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commitdiff
2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into develop
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commitdiff
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