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popup for non-fatal tree parsing error
[jalview.git]
/
src
/
jalview
/
2007-08-22
jprocter
popup for non-fatal tree parsing error
tree
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commitdiff
2007-08-22
jprocter
quick fix for exceptions due to invalid embl refs
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commitdiff
2007-08-22
jprocter
fix serious repetitive exceptions if user closes colour...
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commitdiff
2007-08-22
jprocter
catch occasional -ve imgWidth exception
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commitdiff
2007-08-22
jprocter
added failsafe fix for cases where null sequence names...
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commitdiff
2007-08-22
jprocter
introduce beginning of bug fix for parsing atv style...
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commitdiff
2007-08-22
jprocter
added facility for sending non-fatal warnings back...
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commitdiff
2007-08-13
jprocter
fixed typo in new 2_3 startup file default value
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commitdiff
2007-08-08
jprocter
generalise name of prediction method
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commitdiff
2007-08-08
jprocter
histidine should be midblue (noticed by Peter Knight...
tree
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commitdiff
2007-08-06
jprocter
comment concerning null exceptions generated when annot...
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commitdiff
2007-08-06
jprocter
null pointer exception blocked redraw of annotation...
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commitdiff
2007-08-02
jprocter
javadoc and bugfix for 'save' when jalview is default...
tree
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commitdiff
2007-08-01
jprocter
added the '-tree' parameter to open a tree from the...
tree
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commitdiff
2007-08-01
jprocter
javadoc
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commitdiff
2007-08-01
jprocter
ensure current dataset reference is passed to the cross...
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commitdiff
2007-08-01
jprocter
added tree as an applet to application servlet parameter
tree
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commitdiff
2007-08-01
jprocter
null pointer exception bug fix
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commitdiff
2007-07-31
jprocter
debugging cross references and duplicate sequence db...
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commitdiff
2007-07-30
jprocter
test cc change revoked.
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commitdiff
2007-07-30
jprocter
test cc
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commitdiff
2007-07-30
jprocter
javadoc
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commitdiff
2007-07-25
jprocter
todo comment
tree
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commitdiff
2007-07-25
jprocter
fix crossRef retrieval so either protein OR nucleotide
tree
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commitdiff
2007-07-25
jprocter
uniprot synonym
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commitdiff
2007-07-25
jprocter
better vamsas tree io (for when there are no nodemappings)
tree
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commitdiff
2007-07-25
jprocter
bugfix for vamsas demo
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commitdiff
2007-07-25
jprocter
IO rearrangement for AMSAFile output
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commitdiff
2007-07-25
jprocter
bugfix for vamsas demo and IO rearrangement for AMSAFil...
tree
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commitdiff
2007-07-13
jprocter
preliminary IO classes - read javadoc for purpose
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commitdiff
2007-07-13
jprocter
pickmanager on sequence and alignment position, vamsas...
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commitdiff
2007-07-13
jprocter
new DBRef management and generalised source and entry...
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commitdiff
2007-07-13
jprocter
more semantic groupings of dbs
tree
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commitdiff
2007-07-13
jprocter
debugged mappings and translated sequence recovery
tree
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commitdiff
2007-07-13
jprocter
preliminary states for pca distribution io
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commitdiff
2007-07-13
jprocter
preliminary methods for detecting internal sequence...
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commitdiff
2007-07-13
jprocter
bugfix
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commitdiff
2007-07-13
jprocter
mapping bug fixes
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commitdiff
2007-07-13
jprocter
basic idea for recognising that a feature is a coding...
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commitdiff
2007-07-13
jprocter
bugfixes, partially working code for translation using...
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commitdiff
2007-07-13
jprocter
comments for future viz/detection of internal sequence...
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commitdiff
2007-07-13
jprocter
updated to iscb demo vamsas-client version
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commitdiff
2007-07-13
jprocter
refactored form of vamsas document interaction code
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commitdiff
2007-07-13
jprocter
methods for traversing database reference space
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commitdiff
2007-07-13
jprocter
new search method for finding references like other...
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commitdiff
2007-07-13
jprocter
bugfix and comments
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commitdiff
2007-07-13
jprocter
moved to castor-1.1-cycle - a specially patched version...
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commitdiff
2007-06-18
jprocter
ensure lines are drawn from first alignment column.
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commitdiff
2007-06-18
jprocter
1.1 methods
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commitdiff
2007-06-17
jprocter
vamsas-client-1.2 schema (mappings and Treenodes) and...
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commitdiff
2007-06-17
jprocter
vamsas mouseOvers
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commitdiff
2007-06-17
jprocter
enable mouseover between DNA coding regions and transla...
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commitdiff
2007-06-17
jprocter
enable mouseover between DNA coding regions and transla...
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commitdiff
2007-06-17
jprocter
fix aligned DNA codon translation bug(s) and generate...
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commitdiff
2007-06-17
jprocter
recovery of identical dataset sequence object on undo...
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commitdiff
2007-06-17
jprocter
AlignedCodonFrame holds mapping information between...
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commitdiff
2007-06-17
jprocter
JnetFIle is a readable format
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commitdiff
2007-06-17
jprocter
score only annotation IO
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commitdiff
2007-06-17
jprocter
mouseOver highlighting and broadcasting efficiency
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commitdiff
2007-06-17
jprocter
thread safety during repaint
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commitdiff
2007-06-17
jprocter
null pointer exception fix
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commitdiff
2007-06-17
jprocter
searchresult highlighting on common dataset or specific...
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commitdiff
2007-06-17
jprocter
correct construction of new dataset sequence when resid...
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commitdiff
2007-06-17
jprocter
javadoc
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commitdiff
2007-06-04
jprocter
fix for 'RF' annotation tags and ensured parser is...
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commitdiff
2007-05-28
jprocter
prototype DBRef and Feature Type semantics (for annotat...
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commitdiff
2007-05-28
jprocter
fix compact annotation array routine
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commitdiff
2007-05-28
jprocter
castor mapping unmarshalling logging
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commitdiff
2007-05-28
jprocter
loglevel property constants and castor validation logge...
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commitdiff
2007-05-24
jprocter
castor-1.1 classes (descriptors moved to subpackage)
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commitdiff
2007-05-24
jprocter
castor-1.1 compatible classes from ant task
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commitdiff
2007-05-24
jprocter
jalview 2.0 XML schema versions for backwards compatibi...
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commitdiff
2007-05-22
jprocter
fixed jalview 2.3 bug where gapped aligned codons were...
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commitdiff
2007-05-22
jprocter
refactored document objects and bugfix on jvdataset...
tree
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commitdiff
2007-05-22
amwaterhouse
DONT SET PICKING LABEL
tree
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commitdiff
2007-05-18
jprocter
fixed getObject(VorbaId) lookup in vamsas-client
tree
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commitdiff
2007-05-18
jprocter
update to and from document (and remove deprecated...
tree
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commitdiff
2007-05-18
jprocter
removed uneccessary vamsasLoad commented out.
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commitdiff
2007-05-17
jprocter
refining - still debugging.
tree
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commitdiff
2007-05-17
jprocter
use of proper vamsas client API by Jalview
tree
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commitdiff
2007-05-17
jprocter
modified castor-1.1 library and refactored uk.ac.vamsas
tree
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commitdiff
2007-05-15
amwaterhouse
SequenceListener highlights SearchResults, not just...
tree
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commitdiff
2007-05-10
jprocter
apparent bug in JpredFile parser where annotation was...
tree
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commitdiff
2007-05-10
jprocter
ensure that only annotation referenced in given alignme...
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commitdiff
2007-05-10
jprocter
documentation
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commitdiff
2007-05-10
jprocter
bugfix on copy only referenced annotation in copy const...
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commitdiff
2007-05-10
jprocter
fixed array index out of bounds when not removing align...
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commitdiff
2007-05-10
amwaterhouse
visibility setting
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commitdiff
2007-05-10
amwaterhouse
Keep record of last tooltip
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commitdiff
2007-05-10
amwaterhouse
Visible state of annotation
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commitdiff
2007-05-10
amwaterhouse
Add show all hidden menu
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commitdiff
2007-05-10
amwaterhouse
Dont duplicate annotations in multiple views
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commitdiff
2007-05-10
amwaterhouse
save visible state of annotation
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commitdiff
2007-05-09
jprocter
main method for running from command line and better...
tree
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commitdiff
2007-05-09
amwaterhouse
minor formatting of tooltip
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commitdiff
2007-05-08
jprocter
dialog box menu item naming
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commitdiff
2007-05-08
amwaterhouse
check for null annotations
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commitdiff
2007-05-08
amwaterhouse
set picking label
tree
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commitdiff
2007-05-08
amwaterhouse
instant update when seq colour is pressed
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commitdiff
2007-05-08
amwaterhouse
must specify .CA
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commitdiff
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