1.1 methods

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index dedbd44..d0d84f5 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -493,7 +493,7 @@ public class StockholmFile extends AlignFile
     if (annot == null)\r
     {\r
       annot = new AlignmentAnnotation(type, type, els);\r
-      annotation.add(annot);\r
+      annotation.addElement(annot);\r
     }\r
     else\r
     {\r

diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java
index 81710dd..3ea47f2 100755 (executable)
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -54,7 +54,7 @@ public class DBRefUtils
     {
       if (srcs.containsKey(dbrefs[i].getSource()))
       {
-        res.add(dbrefs[i]);
+        res.addElement(dbrefs[i]);
       }
     }