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JAL-1170 column and row positions confused in implementation of scrollTo API methods
[jalview.git]
/
src
/
jalview
/
2012-09-19
jprocter
JAL-1170 column and row positions confused in implement...
tree
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commitdiff
2012-09-06
jprocter
JAL-958 flag indicating if visualization settings for...
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commitdiff
2012-09-06
jprocter
JAL-958 store/recover normalised flag
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commitdiff
2012-09-06
jprocter
JAL-958 store normalised flag in jalview project
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commitdiff
2012-09-06
jprocter
JAL-1027 JAL-1167 documentation and patched DNA/RNA...
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commitdiff
2012-09-06
jprocter
JAL-1013 - employ index parameter rather than hardcode...
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commitdiff
2012-09-06
jprocter
JAL-1167 method and simple tests for printing score...
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commitdiff
2012-09-05
jprocter
JAL-979 tidy up shmmr hardcoded WS definition
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commitdiff
2012-09-05
jprocter
JAL-1136 give pre-existing custom settings a special...
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commitdiff
2012-09-05
jprocter
formatting
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commitdiff
2012-09-05
jprocter
patch for NPE when no services are available to resolve...
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commitdiff
2012-09-05
jprocter
JAL-975 null any existing preset if user has supplied...
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commitdiff
2012-09-05
jprocter
JAL-1162 catch security exception and just use bare...
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commitdiff
2012-09-05
jprocter
JAL-994 fix when sequence is too short and no jobs run
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commitdiff
2012-09-05
jprocter
JAL-1111 allow news reader window to be moved even...
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commitdiff
2012-09-05
jprocter
JAL-976 fix AACon name typo in source and GUI
tree
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commitdiff
2012-09-04
jprocter
off by one for sequence associated annotation
tree
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commitdiff
2012-09-04
jprocter
unused variable
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commitdiff
2012-09-04
jprocter
JAL-974 JRonn thresholds
tree
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commitdiff
2012-09-03
jprocter
JAL-591 adapt option layout to width of dialog box
tree
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commitdiff
2012-09-03
jprocter
JAL-975 JAL-974 JAL-976 always adjust height after...
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commitdiff
2012-09-03
jprocter
JAL-974 show thresholds for disorder predictor annotati...
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commitdiff
2012-09-03
jprocter
JAL-1153 ensure _linecolour is copied in copy constructor
tree
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commitdiff
2012-09-03
jprocter
JAL-1111 news reader shouldn't be modal.
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commitdiff
2012-09-03
jprocter
JAL-1111 doh - helps if you pass modality flag onto...
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commitdiff
2012-09-02
jprocter
JAL-812 only trigger alignment redraw and calculation...
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commitdiff
2012-09-02
jprocter
JAL-1007 refactored code and patched calculation bug
tree
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commitdiff
2012-09-02
jprocter
JAL-1158 - request focus after opening window.
tree
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commitdiff
2012-09-02
jprocter
JAL-659 cope with case insensitive accessions by forcin...
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commitdiff
2012-09-02
jprocter
JAL-1062 JAL-659 correct start position for retrieved...
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commitdiff
2012-09-02
jprocter
JAL-1062 use matching region or first section of sequen...
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commitdiff
2012-09-01
jprocter
JAL-1075 sort nodes alphabetically
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commitdiff
2012-09-01
jprocter
JAL-1160 support horizontal mouse wheel scrolling events
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commitdiff
2012-09-01
jprocter
JAL-1161 JAL-1160 implement custom mousewheel listener...
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commitdiff
2012-09-01
jprocter
javadoc
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commitdiff
2012-08-31
jprocter
JAL-1015 equivalent menu items for applet - not visible...
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commitdiff
2012-08-31
jprocter
JAL-1015 new menu items in desktop popup menu for creat...
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commitdiff
2012-08-31
jprocter
JAL-1015 resolve dataset sequence before searching...
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commitdiff
2012-08-31
jprocter
JAL-1157 new window for displaying HTML formatted text...
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commitdiff
2012-08-31
jprocter
JAL-1015 refactor tooltip html generation code to jalvi...
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commitdiff
2012-08-31
jprocter
JAL-974 - ensure annotation created in local sequence...
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commitdiff
2012-08-31
jprocter
JAL-1064 patch for NPE when registerd database names...
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commitdiff
2012-08-29
jprocter
JAL-1155 fix panel length calculation for grouped graph...
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commitdiff
2012-08-29
jprocter
JAL-1066 limit available rows to per-sequence when...
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commitdiff
2012-08-29
jprocter
JAL-974 skip empty rows
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commitdiff
2012-08-29
jprocter
JAL-974 set GlobPlot raw/smooth score annotation rows...
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commitdiff
2012-08-29
jprocter
formatting
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commitdiff
2012-08-29
jprocter
JAL-1153 JAL-1155 improved layout and allowed labels...
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commitdiff
2012-08-29
jprocter
JAL-1153 new runtime property set to first non-null...
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commitdiff
2012-08-29
jprocter
JAL-48 patch NPE when encountering an alignment window...
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commitdiff
2012-08-28
jprocter
remove contaminant imports
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commitdiff
2012-08-28
jprocter
remove contaminant imports
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commitdiff
2012-08-28
jprocter
JAL-676 JAL-1001 - simple menu item to access documenta...
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commitdiff
2012-08-28
jprocter
formatting
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commitdiff
2012-08-28
jprocter
JAL-1066 basic gui and functionality for per-sequence...
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commitdiff
2012-08-28
jprocter
JAL-1066 - per-sequence colouring with sequence associa...
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commitdiff
2012-08-28
jprocter
formatting
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commitdiff
2012-08-28
jprocter
JAL-1145 patch: sequence associated annotation with...
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commitdiff
2012-08-28
jprocter
JAL-974 create mixture of sequence features marking...
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commitdiff
2012-08-28
jprocter
JAL-974 refactored creation of Annotation rows from...
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commitdiff
2012-08-28
jprocter
JAL-974 JAL-975 try to cope with temporary server error...
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commitdiff
2012-08-28
jprocter
JAL-1136 sometimes there are no parameters associated...
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commitdiff
2012-08-28
jprocter
JAL-1001 - hack to extract the global URL for a service...
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commitdiff
2012-08-28
jprocter
javadoc and note about broken semantics for findIndex
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commitdiff
2012-08-28
jprocter
JAL-1149 patch
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commitdiff
2012-08-28
jprocter
JAL-1148 reinstate sequence references for annotation...
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commitdiff
2012-08-24
jprocter
JAL-1087 skip processing any of the other command line...
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commitdiff
2012-08-24
jprocter
JAL-1143 - ensure we revalidate annotation panel height...
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commitdiff
2012-08-07
jprocter
JAL-1137 clean up old-style menu code and look
tree
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commitdiff
2012-08-07
jprocter
JAL-1137 JAL-975 simpler menu for the AACon service...
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commitdiff
2012-08-07
jprocter
Debug message associated with TODO for JAL-1136 - re...
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commitdiff
2012-08-07
jprocter
JAL-975 JAL-1137 debug messages for web service client...
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commitdiff
2012-08-05
jprocter
JAL-1131 - todos for later versions
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commitdiff
2012-08-05
jprocter
JAL-1131 ensure new dataset sequence is created if...
tree
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commitdiff
2012-08-03
jprocter
JAL-1136 Ensure asynchronously calculated autoannotatio...
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commitdiff
2012-08-03
jprocter
JAL-1136 JAL-811 JAL-812 store/recover autocalc alignme...
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commitdiff
2012-08-03
jprocter
JAL-1136 fix logic for recovering AACons params
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commitdiff
2012-08-03
jprocter
JAL-1136 store ws-parameter list as XML element content...
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commitdiff
2012-08-03
jprocter
JAL-1136 allow parameter sets to be transferred across...
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commitdiff
2012-08-03
jprocter
JAL-1136 less code-dependent formula for creating serve...
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commitdiff
2012-08-03
jprocter
JAL-1136 - fix abstraction for parameter container...
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commitdiff
2012-08-03
jprocter
JAL-1115 reference to List<SequenceI> passed in 'alignm...
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commitdiff
2012-08-02
jprocter
JAL-976 better logging/error reporting for disorder...
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commitdiff
2012-08-01
jprocter
JAL-976 ensure protein disorder services appears in...
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commitdiff
2012-08-01
jprocter
JAL-976 don't clear menu out before adding jabaws servi...
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commitdiff
2012-08-01
jprocter
JAL-1066 patch regression ac33424148b2a4de29b3ca43f9411...
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commitdiff
2012-07-08
jprocter
a209409239 (JAL-976 - add support for storing service...
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commitdiff
2012-07-08
jprocter
JAL-976 clean out associated annotation
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commitdiff
2012-07-08
jprocter
JAL-976 implement additional calcId method
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commitdiff
2012-07-08
jprocter
JAL-976 simpler parameter update model
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commitdiff
2012-07-08
jprocter
JAL-961 JAL-976 allow access to service URI for paramet...
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commitdiff
2012-07-08
jprocter
JAL-961 JAL-976 recover current settings from associate...
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commitdiff
2012-07-08
jprocter
JAL-976 pick an available instance of a service based...
tree
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commitdiff
2012-07-08
jprocter
bugfix - use currently held parameters
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commitdiff
2012-07-08
jprocter
JAL-976 - storing service parameters on the view model
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commitdiff
2012-07-06
jprocter
JAL-976 test if the sliders have been modified from...
tree
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commitdiff
2012-07-06
jprocter
unique URI for service type
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commitdiff
2012-07-06
jprocter
JAL-961 JAL-976 abstracted container for dynamic calcul...
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commitdiff
2012-07-06
jprocter
tidy imports
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commitdiff
2012-07-06
jprocter
JAL-976 - add support for storing service parameter...
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commitdiff
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