2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2505 simplifying number of SequenceFeature construc... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 remove setters for SequenceFeature.begin,end... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters |
tree | commitdiff |
2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 JAL-2542 SequenceFeatures.shift() to shift... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2542 correct adjustment of sequence features for... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 delete and readd modified feature after Cut... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 improved lookup of features for Export Feature... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2480 methods to get features for group |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2505 use setter not direct access to sf.description |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2505 updates after conflicting merge of JAL-2504 |
tree | commitdiff |
2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2504 update the right feature colour when creating... bug/JAL-2510amendFeatures |
tree | commitdiff |
2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2544 check feature overlaps selection region |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2543 identify as JSON before HTML |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2480 always include all non-positional features... |
tree | commitdiff |
2017-05-22 |
kiramt | Merge remote-tracking branch 'origin/bug/JAL-2256'... |
tree | commitdiff |
2017-05-22 |
Jim Procter | JAL-2418 patch build - broken htsjdk import |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2526 removed redundant call to Sequence.findPosition() |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 refactored test for 'hasFeatures' |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2544 only include features in selected columns... |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 performant lookup of features for sorting |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 only count sequences where feature overlap... |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2505 unit test for sort by feature density, Javadoc |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2490 initial unit tests prior to refactoring |
tree | commitdiff |
2017-05-18 |
Jim Procter | JAL-2388 return empty hidden columns for fully visible... |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2490 lookup sequence features for "labelClass" |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2490 lookup features at each column position |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2543 html-encode quote characters in feature descri... |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2490 retrieve visible features only |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2541 fix to initSeqFrom (and minor code tidy);... |
tree | commitdiff |
2017-05-18 |
kiramt | JAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 |
tree | commitdiff |
2017-05-17 |
Jim Procter | Merge branch 'bug/JAL-2510amendFeatures' into develop |
tree | commitdiff |
2017-05-17 |
Jim Procter | Merge branch 'features/JAL-2447experimentalFlag' into... |
tree | commitdiff |
2017-05-17 |
gmungoc | JAL-2504 use (and update) defaults for new feature... |
tree | commitdiff |
2017-05-17 |
gmungoc | Merge branch 'develop' into bug/JAL-2510amendFeatures |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 unreachable code (for many years) removed |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 refactored method removed |
tree | commitdiff |
2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 set helix number as feature group in SequenceF... |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2403 simplify instantiation / configuration of... |
tree | commitdiff |
2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-16 |
kiramt | JAL-2522 Missed fix to applet |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 refactor to set type and group in SequenceFeat... |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2525 put in missing "transcript" feature type |
tree | commitdiff |
2017-05-16 |
kiramt | JAL-2388 Rationalised hashCode method in HiddenColumns |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 set SequenceFeature group in constructor |
tree | commitdiff |
2017-05-15 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 capitalisation for annotation lines generated... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 case insensitive recognition of annotation... |
tree | commitdiff |
2017-05-15 |
gmungoc | JAL-2532 new feature types and colour changes from... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2535 quick hack to implement posterior probabilitie... |
tree | commitdiff |
2017-05-15 |
kiramt | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-05-15 |
kiramt | JAL-2388 Add missed optimisation |
tree | commitdiff |
2017-05-15 |
Jim Procter | Merge branch 'features/JAL-2376_add-horizontal-bar... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2371 create a default ResidueShader when constructi... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-15 |
gmungoc | JAL-2490 use findFeatures() for efficient feature overl... |
tree | commitdiff |
2017-05-15 |
gmungoc | JAL-2480 redundant code (from merge?) removed |
tree | commitdiff |
2017-05-15 |
gmungoc | JAL-2480 redundant code removed |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2490 performant findFeaturesAtRes |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2483 efficient lookup of feature types and groups... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2525 get sequence features for Ontology term(s... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2480 more efficient contains check on add; tidied... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2480 java.util.RangeComparator renamed IntRangeComp... |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2435splitScreenFont' into... |
tree | commitdiff |
2017-05-12 |
Jim Procter | JAL-2435 mirror antiAlias setting between cDNA and... |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
tree | commitdiff |
2017-05-12 |
Jim Procter | JAL-2388 checkbox in overview popup for applet |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2480 efficient test for features present on sequence |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2228_efficient_featurecounts... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2480 renamed java.util.RangeComparator to IntRangeC... |
tree | commitdiff |
2017-05-11 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2509 JAL-2507 allow whitespace in GS annotation... |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2507 test if an annotation is ‘whitespace’ |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... |
tree | commitdiff |
2017-05-10 |
kiramt | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-05-10 |
kiramt | JAL-2522 Fix to cursor scrolling |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2509 extend set of brackets recognised by stockholm... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 output secondary structure regardless of prese... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-1632 correct i18n and NPE |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2480 include sequenceFeatureStore in createDatasetS... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2483 JAL-2481 fixed findAllFeatures to handle null... |
tree | commitdiff |
2017-05-09 |
kiramt | JAL-2388 Added checkbox to toggle hidden columns menu... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2505 use constructors to set (what will be) final... |
tree | commitdiff |
2017-05-08 |
gmungoc | JAL-2505 set type,desc,begin,end,group,score in Sequenc... |
tree | commitdiff |
2017-05-08 |
gmungoc | JAL-2505 refactored SequenceFeature construction so... |
tree | commitdiff |
2017-05-08 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-08 |
gmungoc | JAL-1632 i18n for warning messages |
tree | commitdiff |
next |