git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Merge branch 'features/JAL-1933_occupancy' into features/JAL-2295setChimeraAttributes
[jalview.git]
/
src
/
jalview
/
2016-12-02
gmungoc
Merge branch 'features/JAL-1933_occupancy' into feature...
tree
|
commitdiff
2016-12-02
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-12-02
gmungoc
JAL-1933 gap value as description; minor formatting
tree
|
commitdiff
2016-12-01
Jim Procter
JAL-1933 update the bounds for the Gap annotation row...
tree
|
commitdiff
2016-12-01
Jim Procter
JAL-1933 basic hack to get gap counts shown as an annot...
tree
|
commitdiff
2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
tree
|
commitdiff
2016-11-30
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
tree
|
commitdiff
2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-29
gmungoc
JAL-2344 corrected conversion of Type enum to FileFormat
features/JAL-2344FileFormatI
tree
|
commitdiff
2016-11-29
gmungoc
JAL-2344 FileFormat.isStructureFile replaces
tree
|
commitdiff
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
tree
|
commitdiff
2016-11-28
tcofoegbu
Merge branch 'features/JAL-2326_JOptionPane-refactoring...
tree
|
commitdiff
2016-11-28
gmungoc
JAL-2344 added FileFormatI.isStructureFile()
tree
|
commitdiff
2016-11-28
gmungoc
JAL-2345 cache generated ImageIcon per file path
tree
|
commitdiff
2016-11-25
gmungoc
JAL-2344 dynamically determine recognised extensions...
tree
|
commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
|
commitdiff
2016-11-25
gmungoc
JAL-2344 override to ignore (obsolete?) JalviewFileView
tree
|
commitdiff
2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
tree
|
commitdiff
2016-11-24
gmungoc
Distinguish text-only output formats and others (.jar...
tree
|
commitdiff
2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
tree
|
commitdiff
2016-11-24
gmungoc
Further tweaks to get tests passing
tree
|
commitdiff
2016-11-24
tcofoegbu
JAL-2326 added layer of abstraction between Jalview...
tree
|
commitdiff
2016-11-24
Jim Procter
JAL-2325 apply license to new source files
tree
|
commitdiff
2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
tree
|
commitdiff
2016-11-23
Jim Procter
Merge branch 'bug/JAL-2323disulfideOverview' into develop
tree
|
commitdiff
2016-11-23
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
tree
|
commitdiff
2016-11-23
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
|
commitdiff
2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-22
Jim Procter
JAL-2197 changed tooltip for Jnet annotation rows to...
tree
|
commitdiff
2016-11-22
tcofoegbu
Merge branch 'bug/JAL-2277_refactorPrintUnwrapped'...
tree
|
commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-2177_update_jmol_to_14.6...
tree
|
commitdiff
2016-11-22
gmungoc
JAL-2337 fix: only adjust once for scroll offset
bug/JAL-2277_refactorPrintUnwrapped
tree
|
commitdiff
2016-11-22
gmungoc
JAL-1919 JAL-2177 handle empty pdbentries list correctly
features/JAL-2177_update_jmol_to_14.6.4_2016.10.26
tree
|
commitdiff
2016-11-22
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
|
commitdiff
2016-11-22
tcofoegbu
JAL-2322 added runnable interface to HTMLOutput class...
tree
|
commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
tree
|
commitdiff
2016-11-22
Jim Procter
JAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...
tree
|
commitdiff
2016-11-22
gmungoc
JAL-2277 refactored AlignmentPanel.printUnwrapped to...
tree
|
commitdiff
2016-11-21
tcofoegbu
JAL-2277 bug fix for mis-alligned graphics output for...
tree
|
commitdiff
2016-11-21
Jim Procter
JAL-2335 patched FeatureRendererModel.findFeaturesAtRes...
bug/JAL-2323disulfideOverview
tree
|
commitdiff
2016-11-21
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-21
tcofoegbu
JAL-2332 bugfix to enable structure chooser opening...
tree
|
commitdiff
2016-11-21
gmungoc
JAL-2333 corrected select columns with 'contact' feature
tree
|
commitdiff
2016-11-21
gmungoc
Merge branch 'develop' into bug/JAL-2323disulfideOverview
tree
|
commitdiff
2016-11-18
gmungoc
JAL-98 with the two types missing from last commit...
bug/JAL-98consensusMemory
tree
|
commitdiff
2016-11-17
gmungoc
JAL-2323 revert to thread-safe iteration over array...
tree
|
commitdiff
2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
tree
|
commitdiff
2016-11-17
gmungoc
JAL-98 javadoc, third party acknowledgements (and very...
tree
|
commitdiff
2016-11-17
gmungoc
JAL-2327 disulfide bond abstracted to SequenceFeature...
tree
|
commitdiff
2016-11-17
gmungoc
JAL-2327 add isContactFeature
tree
|
commitdiff
2016-11-16
Jim Procter
Merge branch 'features/JAL-1723_sequenceReport' into...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2323 render disulfide bond correctly on overview...
tree
|
commitdiff
2016-11-16
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-16
tcofoegbu
JAL-2322 JAL-2309 replaced references to isheadless...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2319 corrected reporting of SIFTS mapping
tree
|
commitdiff
2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
tree
|
commitdiff
2016-11-14
tcofoegbu
JAL-2322 Refactored unified architecture for data ...
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2296 parse Chimera atomspec to AtomSpec
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2296 report whether SequenceFeature actually added...
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
tree
|
commitdiff
2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
tree
|
commitdiff
2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 improved integrity of 'isFinishedInit' flag
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 set finishedInit to false before checking...
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
tree
|
commitdiff
2016-11-10
tcofoegbu
Merge branch 'develop' into bug/JAL-2317_jmol_chimera...
tree
|
commitdiff
2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
tree
|
commitdiff
2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
tree
|
commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
|
commitdiff
2016-11-10
gmungoc
JAL-2320 thread to close Chimera viewer panel if Chimer...
features/JAL-2320_closeChimeraAction
tree
|
commitdiff
2016-11-10
gmungoc
JAL-2320 added getViewer() method to return Chimera...
tree
|
commitdiff
2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
tree
|
commitdiff
2016-11-09
gmungoc
JAL-2295 single constant for "RESNUM" feature name
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservati...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 method added to return a compact mapped range...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 make RangeComparator a top level class for...
tree
|
commitdiff
2016-11-08
tcofoegbu
JAL-2292 updated method calls
tree
|
commitdiff
2016-11-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-08
tcofoegbu
JAL-2292 renamed method and improved implementation...
tree
|
commitdiff
2016-11-07
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2295 handle no progress bar message properly
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
tree
|
commitdiff
2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
|
commitdiff
2016-11-04
kiramt
JAL-2315 Clear sequenceURLLinks if all sequence links...
tree
|
commitdiff
2016-11-04
tcofoegbu
JAL-2292 added javadoc for compareChar(..) utility...
tree
|
commitdiff
next