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JAL-3008 new parameter type RadioChoiceParameter
[jalview.git]
/
src
/
jalview
/
2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updates following review
tree
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commitdiff
2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
bug/JAL-2865removeGC
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
tree
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commitdiff
2018-01-10
kiramt
JAL-797: Added keybindings so that ctrl- or cmd-W close...
tree
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commitdiff
2018-01-09
gmungoc
JAL-2843 unit tests for Save/Load colours and filters...
tree
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commitdiff
2018-01-09
gmungoc
JAL-2808 small tweaks to api / Javadoc
tree
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commitdiff
2018-01-08
gmungoc
JAL-2069 fix setting initial value of slider from threshold
tree
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commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
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commitdiff
2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
tree
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commitdiff
2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
tree
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commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
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commitdiff
2017-12-14
gmungoc
JAL-2843 and Castor metadata file for latest changes
tree
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commitdiff
2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
tree
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commitdiff
2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
tree
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commitdiff
2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 methods relocated
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
tree
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commitdiff
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-12-04
gmungoc
JAL-2808 JAL-2850 update spike build to latest
tree
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commitdiff
2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
tree
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commitdiff
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
tree
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commitdiff
2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
tree
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commitdiff
2017-12-04
gmungoc
JAL-2835 small refactor to only extract transcript...
tree
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commitdiff
2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
tree
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commitdiff
2017-12-01
gmungoc
JAL-2835 refactored to extract specific consequence...
tree
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commitdiff
2017-12-01
gmungoc
JAL-2792 sort feature attributes for output, not for...
tree
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commitdiff
2017-12-01
gmungoc
JAL-2835 additional sub-terms of sequence_variant added
tree
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commitdiff
2017-11-30
gmungoc
JAL-2850 improved use of htsjdk api to read contig...
tree
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commitdiff
2017-11-30
gmungoc
JAL-1766 additional tests for stub htsjdk wrapper
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 fix
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
tree
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commitdiff
2017-11-28
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-28
gmungoc
JAL-2850 MapList.isToForwardStrand added
tree
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commitdiff
2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
tree
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commitdiff
2017-11-27
gmungoc
JAL-2850 VCFLoader refactored to load VCF to contig...
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 update spike to latest
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 refactoring to better handler filter by Score...
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 relocate constants for compiler, add COLUMN_CO...
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 refine FeatureMatcher interface and matcher...
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 don't cache i18n - MessageManager already...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range, Present...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 removed field filters; sort CSQ data by key
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 added conditions Present, NotPresent as options
tree
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commitdiff
2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
tree
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commitdiff
2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 refactor conversion of table data to beans...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 pass FeatureSettings to controller as array...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2808 update conditions list on change of attribute...
tree
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commitdiff
2017-11-22
kiramt
JAL-2842 JAL-2759 change to SeqPanel moveCursor
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-22
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-22
gmungoc
JAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 code tidy
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance improvements to hideColumns
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 renamed helper method better
tree
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commitdiff
2017-11-22
gmungoc
JAL-2808 defer dispose to allow screen location to...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 Javadoc added only
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance tweaks
tree
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commitdiff
2017-11-22
gmungoc
JAL-2808 capture feature attributes datatype (Character...
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 HiddenColumns test polishing
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 corrected old getVisibleBlocksIterator calls...
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
tree
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commitdiff
2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 unit tests for VisibleContigsIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 cursor option for BoundedStartRegionIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 reinstate change from develop (JAL-2636) someh...
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 rationalise visible contigs iteration
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Move isVisible to use cursor
tree
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commitdiff
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