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Merge branch 'bug/JAL-3365_extendedDSSP_via_stockholm' into develop
[jalview.git]
/
src
/
2021-09-08
Jim Procter
JAL-3829 JAL-3868 TODO
tree
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commitdiff
2021-09-06
Jim Procter
JAL-3829 work in progress - look up additional metadata...
tree
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commitdiff
2021-09-06
Jim Procter
JAL-3829 look up column in FTS data
tree
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commitdiff
2021-09-06
Jim Procter
JAL-3829 mocking for PDBFTS for related query to Unipro...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 mocking for testing 3D-Beacons FTS endpoint
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3863 promote non-canonical version of dbref to...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 comments on the 3D structure chooser’s initial...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3865 isolate PDB and TDB clients and last query...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3863 passing test to verify a uniprot accession...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 JAL-3865 StructureChooserQuerySource implement...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3855 don’t need to query Alphafold2 repository...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the Struct...
tree
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commitdiff
2021-09-02
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
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commitdiff
2021-09-02
gmungoc
JAL-1842 adjust code to match changed semantics of...
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 JAL-1842 minor tidying of code
tree
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commitdiff
2021-09-02
gmungoc
JAL-1842 remove redundant call to FeatureRenderer.featu...
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 add canonical DBRefEntry flag to Jalview project
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 generalised Alphafold retrieval mechanism...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 Structure chooser specific FTS interface and...
tree
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commitdiff
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 3d-beacons structure chooser logic (not yet...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 proof in principle 3d-beacons sequence fetcher...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 3d-beacons has a custom alignment retrieval...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 fixed up the 3d-beacons data columns definitio...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 JAL-2176 - TODO re unused argument in FTSRestC...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 Javadoc for FTSColumnPreferences
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 pushed the PDBFTSClient specific code to new...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 removed unneeded attribute in FTS core
tree
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commitdiff
2021-08-30
arngucci
JAL-3829_spike minor changes
tree
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commitdiff
2021-08-30
arngucci
JAL-3832 Gui working, with 3DBeacons parameters
tree
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commitdiff
2021-08-30
arngucci
Merge branch 'arnaud/develop' into arnaud/JAL-3929_spik...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 forgot to add in the dummy 3d-beacons db proxy
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 suppress NPE when trying to retrieve SIFTS...
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 ALPHAFOLD database source based on the PDB...
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 check if an alpha fold ID and retrieve using...
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 check for existence of an alpha fold model...
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 convenience method to check a URL will return...
tree
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commitdiff
2021-06-09
Jim Procter
JAL-3840 don’t update the modal residue count for gaps
patch/JAL-3840_2_11_2
tree
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commitdiff
2021-06-09
Jim Procter
fixes JAL-3840
tree
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commitdiff
2021-06-09
Jim Procter
JAL-3840 failing test - show that addGaps overflows
tree
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commitdiff
2021-06-09
Jim Procter
JAL-3840 don’t update the modal residue count for gaps
patch/JAL-3840_2_11_1_4
tree
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commitdiff
2021-06-09
Jim Procter
fixes JAL-3840
tree
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commitdiff
2021-06-09
Jim Procter
JAL-3840 failing test - show that addGaps overflows
tree
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commitdiff
2021-04-22
Ben Soares
JAL-3833 Allow setHiDPI and setHiDPIScale to work more...
tree
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commitdiff
2021-04-19
Ben Soares
JAL-3833 cap the scaling used by HiDPISetting for incor...
tree
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commitdiff
2021-04-18
Ben Soares
JAL-3833 cap the scaling used by HiDPISetting for incor...
tree
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commitdiff
2021-04-06
Jim Procter
JAL-3832 dummy 3d-beacons database client and code...
tree
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commitdiff
2021-04-06
arngucci
JAL-3829 more testing wit tdbeacons data columns and...
arnaud/develop
tree
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commitdiff
2021-04-01
Arnaldo
JAL-3829 attempt to fix my changes to follow the Jira...
tree
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commitdiff
2021-03-29
Arnaldo
fixed last commit
tree
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commitdiff
2021-03-29
Arnaldo
Request now parses the whole structures, need to fix...
tree
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commitdiff
2021-03-25
Ben Soares
JAL-3633 refactored/simplified LaunchUtils code
tree
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commitdiff
2021-03-25
Arnaldo
TDB.executeRequest fix & test passed
tree
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commitdiff
2021-03-25
Arnaldo
Created 3Dbeacons data_columns.txt Test passed for...
tree
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commitdiff
2021-03-20
Ben Soares
JAL-3503 Changed decimal display of memory in Prefences
tree
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commitdiff
2021-03-19
Ben Soares
JAL-3503 missed a widget being disabled
tree
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commitdiff
2021-03-19
Ben Soares
JAL-3503 Added a Startup tab in Preferences, with gui...
tree
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commitdiff
2021-03-15
Arnaldo
added untracked parsing attempts files
tree
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commitdiff
2021-03-15
Arnaldo
Adding tests for 3DB, currently 2/4 corrects on PanelTest
tree
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commitdiff
2021-03-05
Ben Soares
JAL-3618 Enable appBundleIsTraversable in JFileChooser...
tree
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commitdiff
2021-03-04
Ben Soares
JAL-3594 Allow a channel to use a different preferences...
tree
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commitdiff
2021-03-04
Jim Procter
Revert "Merge branch 'bug/JAL-3806_mappingCoversSequenc...
tree
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commitdiff
2021-03-02
Arnaldo
First commit of 3DB FTS Panel & Restclient
tree
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commitdiff
2021-02-26
Jim Procter
Merge branch 'bug/JAL-3806_mappingCoversSequence' into...
bug/JAL-3806_mappingCoversSequence
tree
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commitdiff
2021-02-24
Jim Procter
Merge branch 'bug/JAL-3818_jmolDeadlock' into releases...
tree
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commitdiff
2021-02-18
gmungoc
JAL-3822 pass panel height and width to wrapped geometr...
tree
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commitdiff
2021-02-18
gmungoc
JAL-2422 remove temporary patch (requires ChimeraX...
tree
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commitdiff
2021-02-17
Jim Procter
JAL-3821 patch for 2.11.2 to retrieve RNA ENA records...
patch/for2.11.2/JAL-3821_ena_rna_moltype
tree
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commitdiff
2021-02-17
Jim Procter
Merge branch 'feature/JAL-3692enaEndpoint' into patch...
tree
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commitdiff
2021-02-11
gmungoc
JAL-3818 process Jmol callbacks in AWT thread
bug/JAL-3818_jmolDeadlock
tree
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commitdiff
2021-02-10
Ben Soares
JAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas...
tree
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commitdiff
2021-02-10
Ben Soares
JAL-3521 Change grouped Jalview windows on linux taskba...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3814 don’t automatically launch the news browser...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3812 new argument ‘-nohtmltemplates’ and user prefe...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3811 document SHOW_JWS2_SERVICES user preference...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3814 NONEWS property
tree
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commitdiff
2021-02-04
gmungoc
JAL-2422 a fix and a fudge for two failing ChimeraX...
tree
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commitdiff
2021-02-04
gmungoc
JAL-3806 fix and test for one-to-many sequence mapping...
bug/JAL-3806_mappingCoversCDS_reprise
tree
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commitdiff
2021-01-28
gmungoc
JAL-3806 more lax allowance (3 positions) for stop...
tree
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commitdiff
2021-01-21
gmungoc
JAL-3038 corrected code that reads editable JComboBox...
tree
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commitdiff
2020-12-14
Ben Soares
JAL-3280 Fixed the version checking URL formulation...
Develop-2_11_2_0-d20201215
tree
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commitdiff
2020-12-14
Ben Soares
JAL-3594 Allow setting of getdownappbase and getdowndis...
tree
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commitdiff
2020-12-14
Ben Soares
JAL-3280 Test for remote release build_properties file...
tree
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commitdiff
2020-12-14
Ben Soares
JAL-3280 fixes after CR-JAL-241. Now only checking...
tree
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commitdiff
2020-12-14
Ben Soares
JAL-3280 Pass appbase and appdir from getdown to jalvew...
tree
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commitdiff
2020-12-11
Ben Soares
JAL-3594 Defintely want SplashScreen to appear in the...
tree
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commitdiff
2020-12-11
Ben Soares
JAL-3594 Adjustments to allow JalviewJS to use ChannelP...
tree
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commitdiff
2020-12-11
Ben Soares
JAL-3775 JAL-3633 Make java.net.Authenticator code...
tree
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commitdiff
2020-12-09
Ben Soares
JAL-3594 Images for splash screen
tree
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commitdiff
2020-12-09
Ben Soares
JAL-3594 JAL-3728 Added taskbar icons to desktop and...
tree
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commitdiff
2020-12-08
Ben Soares
Merge branch 'merge/develop_and_rebase_squashed_merge_J...
tree
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commitdiff
2020-12-08
Ben Soares
JAL-3594 Change main window title
tree
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commitdiff
2020-12-07
Ben Soares
JAL-3594 added BG logo. Changed some named Jalviews...
tree
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commitdiff
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