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JAL-1976 improved exception handler.
[jalview.git]
/
src
/
2016-04-11
gmungoc
JAL-2051 fetch Ensembl Gene accessions one at a time
tree
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commitdiff
2016-04-11
tcofoegbu
merge
tree
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commitdiff
2016-04-11
tcofoegbu
JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
tree
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commitdiff
2016-04-11
gmungoc
JAL-1705 (new preference option to) hide introns when...
tree
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commitdiff
2016-04-08
Jim Procter
Merge branch 'feature/JAL-2050_intronhidden' into develop
tree
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commitdiff
2016-04-08
Jim Procter
JAL-2050 JAL-1722 new getSelectedRange() method to...
tree
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commitdiff
2016-04-08
Jim Procter
JAL-2053 fix erratic hidden column marker display
tree
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commitdiff
2016-04-08
Jim Procter
JAL-2053 JAL-1551 javadoc and simpler code
tree
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commitdiff
2016-04-07
Jim Procter
JAL-1722 fix: don’t draw visible regions outside viewpo...
tree
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commitdiff
2016-04-06
tcofoegbu
merge
tree
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commitdiff
2016-04-06
tcofoegbu
JAL-2047 JAL-1919 fixed empty tooltip text when a cell...
tree
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commitdiff
2016-04-06
tcofoegbu
JAL-1960 updated test to capture new behaviour improvement
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 add/delete SequenceFeature operate on dataset...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 setSequenceFeature contract implementation...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 explicit contract for get/set SequenceFeatures...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 remove javadoc
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 simpler deriveSequence - promote to dataset...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 clarify contract for copy constructor and...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 explicitly copy char[] when cloning sequence...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 safer createDatasetSequence manipulates privat...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 drop isSelected(int) in favour of original...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 catch -ve column values
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 TODO for new ColumnSelection API
tree
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commitdiff
2016-04-04
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 - note about possible side effect on JalviewLi...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2010 refactoring todo
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 use fast column selection test
tree
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commitdiff
2016-04-04
Jim Procter
JAL-969 refactor columnselection operation (during...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 faster check for a column being selected
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 javadoc
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 faster getMax/getMin selected column, with...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 JAL-1722 - store selection as ArrayList and...
tree
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commitdiff
2016-04-01
gmungoc
Merge branch 'features/JAL-653_JAL-1766_htslib_refseqsu...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 ensure the right mapping is used to align...
tree
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commitdiff
2016-04-01
tcofoegbu
JAL-2048 Update to structureviz2 package from cytoscape
tree
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commitdiff
2016-04-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 reworked AlignmentUtils.makeCdsAlignment and...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 tweak to MapList.toString for debugging
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 generalised getLength() to handle [start1...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 include stop codon in mapped CDS range so...
tree
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commitdiff
2016-04-01
gmungoc
JAL-2037 set DBRefEntry.version to "0" not "" in EMBL...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 fetch all Ensembl xrefs (except GO terms)
tree
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commitdiff
2016-04-01
tcofoegbu
JAL-2045 JAL-2047 improvement for sorting PDB quality...
tree
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commitdiff
2016-03-31
tcofoegbu
JAL-2035 improvement to add binding to multiple model
tree
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commitdiff
2016-03-30
tcofoegbu
JAL-1668 further clean-up of popup menu and NPE check...
tree
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commitdiff
2016-03-30
tcofoegbu
JAL-2038 bug fix for NPE while setting progress message...
tree
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commitdiff
2016-03-28
tcofoegbu
merge
tree
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commitdiff
2016-03-28
tcofoegbu
JAL-1668 removed redundant UI elements in PopupMenu...
tree
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commitdiff
2016-03-28
gmungoc
JAL-1705 Javadoc / debug output tweaks
tree
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commitdiff
2016-03-28
gmungoc
JAL-2016 push getFeatureColourScheme(source) into Seque...
tree
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commitdiff
2016-03-28
gmungoc
JAL-2036 update AlignFrame menus when dbreffetcher...
tree
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commitdiff
2016-03-25
tcofoegbu
JAL-2035 improvement to bind Jalview to Chimera model...
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1919 Settings to disable duplicate generation of...
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1479 Commented out debug sysout's for SiftsClient
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1919 Added ability to generate temprature factor...
tree
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commitdiff
2016-03-24
tcofoegbu
merge
tree
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commitdiff
2016-03-24
tcofoegbu
fixed applet build
tree
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commitdiff
2016-03-24
gmungoc
JAL-1705 removed experimental 'highlight selection...
tree
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commitdiff
2016-03-24
gmungoc
JAL-2032 structure follow mouseover in a copy of a...
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
tree
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commitdiff
2016-03-23
tcofoegbu
merge
tree
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commitdiff
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
tree
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commitdiff
2016-03-23
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-03-23
gmungoc
JAL-1705 add DBRefEntry for 'self' to retrieved transcr...
tree
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commitdiff
2016-03-23
gmungoc
JAL-1997 default empty tooltip required for correct...
tree
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commitdiff
2016-03-22
tcofoegbu
resolve conflict with Mungo's merge
tree
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
tree
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commitdiff
2016-03-22
gmungoc
Merge branch 'features/JAL-653_JAL-1766_htslib_refseqsu...
tree
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commitdiff
2016-03-22
gmungoc
JAL-1705 add xref seqs to 'parent' dataset only if...
tree
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commitdiff
2016-03-22
gmungoc
JAL-1191 isolated SequenceOntology (BioJava wrapper...
tree
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commitdiff
2016-03-22
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-03-21
tcofoegbu
JAL-1919 refactor moved StructureViewerSettings
tree
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commitdiff
2016-03-21
gmungoc
Merge branch 'features/JAL-653_JAL-1766_htslib_refseqsu...
tree
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commitdiff
2016-03-21
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-03-21
gmungoc
JAL-2029 further fixes to get correct xrefs and xrefs...
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
features/JAL-1919_mmCIF-Support
tree
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commitdiff
2016-03-21
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-03-21
gmungoc
JAL-1855 dbfetch from /ena_sequence/, /ena_coding/
tree
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commitdiff
2016-03-21
gmungoc
JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
tree
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commitdiff
2016-03-21
tcofoegbu
JAL-2028 added improvement for preconfigured ordering...
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
tree
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commitdiff
2016-03-21
tcofoegbu
mungo merge
tree
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commitdiff
2016-03-21
tcofoegbu
develop merge
tree
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commitdiff
2016-03-21
tcofoegbu
JAL-1667 Changed PDBSearchPanel's search result layout...
tree
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commitdiff
2016-03-16
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-03-16
gmungoc
JAL-1705 xref ENST to correct (ENSP) accession id
tree
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commitdiff
2016-03-16
tcofoegbu
JAL-2028 improvment to the displayed column customisation
tree
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commitdiff
2016-03-15
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
mungo_develop
tree
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commitdiff
2016-03-15
gmungoc
JAL-2016 corrected Javadoc, added test for anonymous...
tree
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commitdiff
2016-03-15
gmungoc
JAL-2016 FeatureSettingsI now FeatureSettingsModelI
tree
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commitdiff
2016-03-15
gmungoc
JAL-1705 code tidy/comment only
tree
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commitdiff
2016-03-15
gmungoc
JAL-1705 compute reverse complement of variants on...
tree
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commitdiff
2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
tree
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commitdiff
2016-03-11
tcofoegbu
JAL-1478 Fixed ArrayIndexOutOfBoundsException while...
tree
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commitdiff
2016-03-11
tcofoegbu
merge
tree
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commitdiff
2016-03-11
tcofoegbu
JAL-2026 Bug fix for best quality filter
tree
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commitdiff
2016-03-11
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-03-11
gmungoc
JAL-1270 unit test for SequenceIdMatcher.SeqIdName
tree
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commitdiff
2016-03-11
gmungoc
JAL-1705 check Retry-After response header
tree
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commitdiff
2016-03-11
gmungoc
JAL-1705 javadoc added only
tree
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commitdiff
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