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Merge branch 'develop' into develop_m2_8_1_2
[jalview.git]
/
src
/
2012-09-25
jprocter
JAL-1031 JAL-1032 if selection is non-null but empty...
tree
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commitdiff
2012-09-25
jprocter
JAL-1010 write validated value back to text field to...
tree
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commitdiff
2012-09-25
jprocter
JAL-1173 - trap redraw buffer OOM errors. needs a test...
tree
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commitdiff
2012-09-25
jprocter
JAL-1173 try to catch OOMs when loading annotation...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 revised applet parameter documentation to stand...
tree
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commitdiff
2012-09-24
jprocter
formatting
tree
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commitdiff
2012-09-24
jprocter
JAL-958 normalise logo menu options in applet
tree
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commitdiff
2012-09-24
jprocter
JAL-958 enable logo display when normalise option selected
tree
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
tree
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commitdiff
2012-09-24
jprocter
only recalc group conservation after last sequence...
tree
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
tree
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commitdiff
2012-09-24
jprocter
JAL-958 JAL-966 refactor group/alignment associated...
tree
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commitdiff
2012-09-21
jprocter
JAL-849 try harder and wait for longer for JABAWS to...
tree
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commitdiff
2012-09-21
jprocter
JAL-1171 refactor code to allow gui update for global...
tree
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commitdiff
2012-09-21
jprocter
JAL-1165 visual delay whilst results are processed.
tree
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commitdiff
2012-09-21
jprocter
JAL-1165 allow progress indicators on the web service...
tree
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commitdiff
2012-09-21
jprocter
JAL-1130 jalview spinning icon for web service dialog
tree
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commitdiff
2012-09-21
jprocter
JAL-1130 splashscreen logo
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo in help, splash screen and web servic...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo spinner in webservices status window
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 made SplashScreen able to be a dialog that...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 refactored standard hyperlink handler code...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 trial view of new logo on splashscreen.
tree
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commitdiff
2012-09-19
jprocter
JAL-1170 column and row positions confused in implement...
tree
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commitdiff
2012-09-06
jprocter
JAL-958 flag indicating if visualization settings for...
tree
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commitdiff
2012-09-06
jprocter
JAL-958 store/recover normalised flag
tree
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commitdiff
2012-09-06
jprocter
JAL-958 store normalised flag in jalview project
tree
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commitdiff
2012-09-06
jprocter
JAL-1027 JAL-1167 documentation and patched DNA/RNA...
tree
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commitdiff
2012-09-06
jprocter
JAL-1013 - employ index parameter rather than hardcode...
tree
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commitdiff
2012-09-06
jprocter
JAL-1167 method and simple tests for printing score...
tree
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commitdiff
2012-09-05
jprocter
JAL-979 tidy up shmmr hardcoded WS definition
tree
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commitdiff
2012-09-05
jprocter
JAL-1136 give pre-existing custom settings a special...
tree
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commitdiff
2012-09-05
jprocter
formatting
tree
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commitdiff
2012-09-05
jprocter
patch for NPE when no services are available to resolve...
tree
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commitdiff
2012-09-05
jprocter
JAL-975 null any existing preset if user has supplied...
tree
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commitdiff
2012-09-05
jprocter
JAL-1162 catch security exception and just use bare...
tree
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commitdiff
2012-09-05
jprocter
JAL-994 fix when sequence is too short and no jobs run
tree
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commitdiff
2012-09-05
jprocter
JAL-1111 allow news reader window to be moved even...
tree
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commitdiff
2012-09-05
jprocter
JAL-976 fix AACon name typo in source and GUI
tree
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commitdiff
2012-09-04
jprocter
off by one for sequence associated annotation
tree
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commitdiff
2012-09-04
jprocter
unused variable
tree
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commitdiff
2012-09-04
jprocter
JAL-974 JRonn thresholds
tree
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commitdiff
2012-09-03
jprocter
JAL-591 adapt option layout to width of dialog box
tree
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commitdiff
2012-09-03
jprocter
JAL-975 JAL-974 JAL-976 always adjust height after...
tree
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commitdiff
2012-09-03
jprocter
JAL-974 show thresholds for disorder predictor annotati...
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commitdiff
2012-09-03
jprocter
JAL-1153 ensure _linecolour is copied in copy constructor
tree
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commitdiff
2012-09-03
jprocter
JAL-1111 news reader shouldn't be modal.
tree
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commitdiff
2012-09-03
jprocter
JAL-1111 doh - helps if you pass modality flag onto...
tree
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commitdiff
2012-09-02
jprocter
JAL-812 only trigger alignment redraw and calculation...
tree
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commitdiff
2012-09-02
jprocter
JAL-1007 refactored code and patched calculation bug
tree
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commitdiff
2012-09-02
jprocter
JAL-1158 - request focus after opening window.
tree
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commitdiff
2012-09-02
jprocter
JAL-659 cope with case insensitive accessions by forcin...
tree
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commitdiff
2012-09-02
jprocter
JAL-1062 JAL-659 correct start position for retrieved...
tree
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commitdiff
2012-09-02
jprocter
JAL-1062 use matching region or first section of sequen...
tree
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commitdiff
2012-09-01
jprocter
JAL-1075 sort nodes alphabetically
tree
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commitdiff
2012-09-01
jprocter
JAL-1160 support horizontal mouse wheel scrolling events
tree
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commitdiff
2012-09-01
jprocter
JAL-1161 JAL-1160 implement custom mousewheel listener...
tree
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commitdiff
2012-09-01
jprocter
javadoc
tree
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commitdiff
2012-08-31
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 equivalent menu items for applet - not visible...
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 new menu items in desktop popup menu for creat...
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 resolve dataset sequence before searching...
tree
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commitdiff
2012-08-31
jprocter
JAL-1157 new window for displaying HTML formatted text...
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 refactor tooltip html generation code to jalvi...
tree
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commitdiff
2012-08-31
jprocter
JAL-974 - ensure annotation created in local sequence...
tree
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commitdiff
2012-08-31
jprocter
JAL-1064 patch for NPE when registerd database names...
tree
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commitdiff
2012-08-29
jprocter
JAL-1155 fix panel length calculation for grouped graph...
tree
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commitdiff
2012-08-29
jprocter
JAL-1066 limit available rows to per-sequence when...
tree
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commitdiff
2012-08-29
jprocter
JAL-974 skip empty rows
tree
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commitdiff
2012-08-29
jprocter
JAL-974 set GlobPlot raw/smooth score annotation rows...
tree
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commitdiff
2012-08-29
jprocter
formatting
tree
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commitdiff
2012-08-29
jprocter
JAL-1153 JAL-1155 improved layout and allowed labels...
tree
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commitdiff
2012-08-29
jprocter
JAL-1153 new runtime property set to first non-null...
tree
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commitdiff
2012-08-29
jprocter
JAL-48 patch NPE when encountering an alignment window...
tree
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commitdiff
2012-08-28
jprocter
remove contaminant imports
tree
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commitdiff
2012-08-28
jprocter
remove contaminant imports
tree
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commitdiff
2012-08-28
jprocter
JAL-676 JAL-1001 - simple menu item to access documenta...
tree
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commitdiff
2012-08-28
jprocter
formatting
tree
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commitdiff
2012-08-28
jprocter
JAL-1066 basic gui and functionality for per-sequence...
tree
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commitdiff
2012-08-28
jprocter
JAL-1066 - per-sequence colouring with sequence associa...
tree
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commitdiff
2012-08-28
jprocter
formatting
tree
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commitdiff
2012-08-28
jprocter
JAL-1145 patch: sequence associated annotation with...
tree
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commitdiff
2012-08-28
jprocter
JAL-974 create mixture of sequence features marking...
tree
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commitdiff
2012-08-28
jprocter
JAL-974 refactored creation of Annotation rows from...
tree
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commitdiff
2012-08-28
jprocter
JAL-974 JAL-975 try to cope with temporary server error...
tree
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commitdiff
2012-08-28
jprocter
JAL-1136 sometimes there are no parameters associated...
tree
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commitdiff
2012-08-28
jprocter
JAL-1001 - hack to extract the global URL for a service...
tree
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commitdiff
2012-08-28
jprocter
javadoc and note about broken semantics for findIndex
tree
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commitdiff
2012-08-28
jprocter
JAL-1149 patch
tree
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commitdiff
2012-08-28
jprocter
JAL-1148 reinstate sequence references for annotation...
tree
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commitdiff
2012-08-24
jprocter
JAL-879 adding to _rnaList will trigger another onUINew...
tree
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commitdiff
2012-08-24
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-24
jprocter
JAL-1087 skip processing any of the other command line...
tree
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commitdiff
2012-08-24
jprocter
JAL-1143 - ensure we revalidate annotation panel height...
tree
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commitdiff
2012-08-20
jprocter
JAL-1140 library methods for accessing the Annotate3d...
tree
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commitdiff
2012-08-20
jprocter
JAL-1028 utilities package for accessing synchronous...
tree
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commitdiff
2012-08-20
jprocter
JAL-1140 bugfix - getDataName throws errors - prefer...
tree
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commitdiff
2012-08-20
jprocter
JAL-1140 use the Reader provided by the jalview.io...
tree
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commitdiff
2012-08-17
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-14
Anne Menard
last version stay many bugs ..
tree
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commitdiff
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