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JAL-1953 -External from all interfaces names
[jalview.git]
/
src
/
2017-12-18
kjvdheide
JAL-1953 -External from all interfaces names
tree
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commitdiff
2017-12-18
kjvdheide
JAL-1953 attempt at changing Aptx's font to Jalview's
tree
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commitdiff
2017-12-18
kjvdheide
JAL-2844 made null tree nodes return null wrappers...
tree
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commitdiff
2017-12-18
kjvdheide
Merge branch 'kjvdh/features/PhylogenyViewer' into
tree
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commitdiff
2017-12-18
kjvdheide
JAL-1953 redundant tree interface instantiation removed
tree
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commitdiff
2017-12-15
kjvdheide
JAL-2852 EPS saving code ported from TreePanel to Aptx.
tree
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commitdiff
2017-12-15
kjvdheide
JAL-1953 added Y coordinate getter method
tree
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commitdiff
2017-12-15
kjvdheide
JAL-2852 merged the EPS button adding from main branch...
tree
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commitdiff
2017-12-15
kjvdheide
JAL-1953 node comparing now includes checking node...
tree
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commitdiff
2017-12-15
kjvdheide
JAL-1953 removed deprecated interfaces
tree
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commitdiff
2017-12-15
kjvdheide
JAL-2852 added EPS export button to File menu
tree
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commitdiff
2017-12-14
kjvdheide
JAL-1953 more progress on interfaces, jalview binding...
tree
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commitdiff
2017-12-12
kjvdheide
JAL-2874 filtering alignment now also works when just...
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commitdiff
2017-12-12
kjvdheide
JAL-2874 added filtering when a subtree is selected
tree
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commitdiff
2017-12-12
kjvdheide
JAL-2877 disabled Jalview's own viewer for testing
spikes/thomas
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commitdiff
2017-12-11
kjvdheide
JAL-2872 hide sort button in Aptx unless it's actually...
tree
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commitdiff
2017-12-11
kjvdheide
JAL-2877 disabled Jalview's default tree viewer when...
tree
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commitdiff
2017-12-11
kjvdheide
JAL-1953 fixed interface misnaming
tree
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commitdiff
2017-12-11
kjvdheide
JAL-1953 start on making everything interface based
tree
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commitdiff
2017-12-08
kjvdheide
JAL-1953 renaming of concrete implementation as well
tree
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commitdiff
2017-12-08
kjvdheide
JAL-2844 reallow clicks to the left of the root (groups...
tree
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commitdiff
2017-12-07
kjvdheide
JAL-2872 Redundant Aptx GUI menu items hidden, sorting...
tree
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commitdiff
2017-12-06
kjvdheide
JAL-2794 disabled branch colors on selection for now
tree
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commitdiff
2017-12-06
kjvdheide
JAL-2871 Added check whether configuration has been...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2838 Sorting from the alignment view menu now funct...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2847 Rearranging and cleaning up of database query...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2794 associate leaves now iterates through ALL...
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commitdiff
2017-12-05
kjvdheide
JAL-2847 various error popups for db querying now have...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2847 Strings for the various tree databases added
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2847 if pfam id is detected in first sequence its...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2847 added pfam to DBRef source name lookup
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2805 JAL-2847 JAL-281 added file path to Aptx frame...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2838 tree viewer interface expanded to include...
tree
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commitdiff
2017-12-05
kjvdheide
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2838 filled in actionPerformed of the tree sort...
tree
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commitdiff
2017-12-05
kjvdheide
JAL-2838 Aptx frames now appear in the alignment sortin...
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commitdiff
2017-12-03
kjvdheide
JAL-2847 start of cleaning up db loading code
tree
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commitdiff
2017-12-03
kjvdheide
JAL-2844 rearranging code
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 fix
tree
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commitdiff
2017-11-29
kjvdheide
JAL-2844 check added for clicks left of root node
tree
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commitdiff
2017-11-29
kjvdheide
JAL-2844 entirely X coord based partitioning
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commitdiff
2017-11-29
kjvdheide
JAL-2844 somewhat better repainting
tree
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commitdiff
2017-11-29
kjvdheide
JAL-2844 temporary kludge to draw a line
tree
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commitdiff
2017-11-29
kjvdheide
JAL-2844 added grouping to alignment panel based on...
tree
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commitdiff
2017-11-29
kjvdheide
JAL-2844 start on colouring back onto the alignment
tree
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commitdiff
2017-11-29
kjvdheide
JAL-2844 added colouring to partition selection
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commitdiff
2017-11-28
kjvdheide
JAL-2844 added offset to x coord to make it equal 0...
tree
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commitdiff
2017-11-28
kjvdheide
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-11-28
kjvdheide
JAL-2844 first go at partitioning, based on actual...
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
tree
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commitdiff
2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
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commitdiff
2017-11-27
kjvdheide
JAL-2844 added selection threshold (non-adjusted calcul...
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commitdiff
2017-11-27
kjvdheide
JAL-2799 re-enabled change listener for Aptx's tabs...
tree
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commitdiff
2017-11-27
kjvdheide
JAL-2844 line drawing at mouse click added on top of...
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commitdiff
2017-11-26
kjvdheide
JAL-2847 first rough attempt at loading in via database ID
tree
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commitdiff
2017-11-24
kjvdheide
JAL-2799 rearranged AptxInit code
tree
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commitdiff
2017-11-24
kjvdheide
JAL-2799 ALL trees are now loaded in as separate Aptx...
tree
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commitdiff
2017-11-24
kjvdheide
JAL-2794 binding now exclusively supports single tab...
tree
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commitdiff
2017-11-24
kjvdheide
Merge branch 'kjvdh/features/PhylogenyViewer' of https...
tree
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commitdiff
2017-11-24
kjvdheide
JAL-2838 start on sorting
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commitdiff
2017-11-24
kjvdheide
JAL-2838 made getAssociatedPanels public
tree
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commitdiff
2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
tree
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commitdiff
2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
tree
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commitdiff
2017-11-22
kjvdheide
JAL-2794 reworked, everything routes via avport.sendsel...
tree
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commitdiff
2017-11-22
kjvdheide
JAL-2794 removed several redundancies in the binding...
tree
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commitdiff
2017-11-22
kjvdheide
JAL-2844 mouse press code rearranged to prepare for...
tree
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commitdiff
2017-11-22
kjvdheide
JAL-2847 small things, filled in actionperformeds
tree
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commitdiff
2017-11-22
kjvdheide
JAL-2799 fixed selections not carrying over to tabs...
tree
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commitdiff
2017-11-21
kjvdheide
JAL-2847 added database menu items and listeners
tree
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commitdiff
2017-11-21
kjvdheide
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2017-11-21
kjvdheide
JAL-281 added string label for loading from database
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commitdiff
2017-11-20
kjvdheide
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2017-11-20
kjvdheide
JAL-2799 JAL-2805 JAL-281 multiple trees can now be...
tree
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commitdiff
2017-11-20
kjvdheide
JAL-281 added history box to tree url input window
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commitdiff
2017-11-20
kjvdheide
JAL-281 option pane with error handling for selecting...
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commitdiff
2017-11-17
kjvdheide
JAL-2805 code refactor (actionPerformed cleaned up...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
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commitdiff
2017-11-17
kjvdheide
JAL-2805 reorganized code, tree building goes through...
tree
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commitdiff
2017-11-17
kjvdheide
JAL-2795 removed unneeded distancematrix length/width...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
tree
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commitdiff
2017-11-17
kjvdheide
Merge branch 'kjvdh/features/PhylogenyViewer' of
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
tree
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commitdiff
2017-11-17
kjvdheide
JAL-2805 couple of method name changes
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
tree
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commitdiff
2017-11-17
kjvdheide
JAL-281 added menu items and listeners to load from...
tree
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commitdiff
2017-11-17
kjvdheide
JAL-281 changed load associated tree GUI item to menu...
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-16
kiramt
JAL-2831 Removed unwanted hidden sequences checks
bug/JAL-2831
tree
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commitdiff
2017-11-16
kjvdheide
JAL-2805 expanded tree and treenode interfaces
tree
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commitdiff
2017-11-16
kjvdheide
JAL-2805 loads of file reorganizing, interfaces expanded
tree
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commitdiff
2017-11-16
kiramt
JAL-2842 remove infinite loop in cursor move
bug/JAL-2842
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commitdiff
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