2017-05-03 |
Jim Procter | JAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices |
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2017-05-02 |
Jim Procter | JAL-1632 validate CalculationChooser when selection... |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-1632 enable/disable CalculationChooser buttons... |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-1632 compare size of input against minimums for... |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-1632 OK->Calculate, Cancel->Close buttons |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-1632 removed ‘tree’ option and changed dialog layout |
tree | commitdiff |
2017-05-02 |
Jim Procter | Merge branch 'develop' into features/JAL-2393customMatrices |
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2017-05-02 |
Jim Procter | Merge branch 'bug/JAL-2424getVisibleContigs' into develop |
tree | commitdiff |
2017-05-02 |
gmungoc | JAL-2499 inlined two 1-line methods |
tree | commitdiff |
2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
tree | commitdiff |
2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-05-01 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-05-01 |
tcofoegbu | JAL-2482 bug fix |
tree | commitdiff |
2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to |
tree | commitdiff |
2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 use constant for preference token |
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2017-04-27 |
Jim Procter | JAL-1933 consensus calculation doesn’t depend on occupa... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 desktop preferences for occupancy |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 only create and add occupancy row to alignment... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-2494 fix: updated behaviour for SequenceGroup.findA... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-2494 fixed behaviour for null parameters in line... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-2494 javadoc for AnnotatedCollectionI.findAnnotations |
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2017-04-27 |
Jim Procter | JAL-2432 desktop: filter/select columns by threshold... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 JAL-2432 code tidy |
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2017-04-27 |
Jim Procter | JAL-2432 left justify value shown after adjusting thres... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 JAL-2432 percentile filter for select/hide... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 shade occupancy from light grey to black for... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 don’t show symbol counts under histogram ... |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 occupancy row has a space below it for counts |
tree | commitdiff |
2017-04-25 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-04-25 |
tcofoegbu | JAL-2489 bug fix |
tree | commitdiff |
2017-04-24 |
gmungoc | JAL-2487 remove redundant refreshGUI to minimise thread... |
tree | commitdiff |
2017-04-24 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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2017-04-24 |
gmungoc | JAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs |
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2017-04-24 |
kiramt | JAL-2439 Fixed opposite out-by-one problem in wrapped... |
tree | commitdiff |
2017-04-24 |
kiramt | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-04-24 |
kiramt | JAL-2439 Fix to hidden column marker being one row... |
tree | commitdiff |
2017-04-21 |
gmungoc | JAL-2423 tweak tree panel title, add Spanish text |
tree | commitdiff |
2017-04-21 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-21 |
tcofoegbu | JAL-2485 Bug fix to filter out uniprot response header... |
tree | commitdiff |
2017-04-19 |
tcofoegbu | JAL-2482 added null check |
tree | commitdiff |
2017-04-18 |
tcofoegbu | JAL-2482 Bugfix |
tree | commitdiff |
2017-04-12 |
gmungoc | JAL-1632 removed check for aligned sequences for Tree... |
tree | commitdiff |
2017-04-12 |
gmungoc | JAL-1632 remove unused check for sequences aligned |
tree | commitdiff |
2017-04-12 |
gmungoc | JAL-2403 ensure array held in Matrix is immutable |
tree | commitdiff |
2017-04-12 |
gmungoc | JAL-2403 public static methods to convert distance... |
tree | commitdiff |
2017-04-12 |
gmungoc | JAL-1632 one PCA/Tree per panel, closed when panel... |
tree | commitdiff |
2017-04-11 |
gmungoc | JAL-2403 improved ScoreModelI hierarchy as per Kira... |
tree | commitdiff |
2017-04-11 |
gmungoc | JAL-2428 Javadoc |
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2017-04-11 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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2017-04-10 |
gmungoc | JAL-2403 unit tests for PCA.computeSimilarity, signatur... |
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2017-04-10 |
tcofoegbu | Merge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux... |
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2017-04-10 |
tcofoegbu | JAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux |
tree | commitdiff |
2017-04-10 |
tcofoegbu | Merge branch 'develop' into bug/JAL-2255_seq-fetcher... |
tree | commitdiff |
2017-04-10 |
gmungoc | JAL-2403 removed remaining jvCalcMode references from PCA |
tree | commitdiff |
2017-04-10 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-10 |
gmungoc | JAL-2361 option to save on OK of changed named colour... |
tree | commitdiff |
2017-04-09 |
gmungoc | JAL-2393 remove unused commented code |
tree | commitdiff |
2017-04-07 |
gmungoc | JAL-2393 code tidying for review comments |
tree | commitdiff |
2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-06 |
gmungoc | JAL-2361 make a modified saved scheme the backout check... |
tree | commitdiff |
2017-04-05 |
gmungoc | JAL-2384 JAL-2371 update ResidueShader on change of... |
tree | commitdiff |
2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but... |
tree | commitdiff |
2017-04-05 |
gmungoc | JAL-2361 apply any saved changes to current colour... |
tree | commitdiff |
2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2314 |
tree | commitdiff |
2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2461 bug/JAL-2461 |
tree | commitdiff |
2017-03-31 |
gmungoc | JAL-2405 additional checks for circular reference in... |
tree | commitdiff |
2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView |
tree | commitdiff |
2017-03-31 |
gmungoc | JAL-2430 code tidy, unit test for Jmol hidden column... |
tree | commitdiff |
2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups |
tree | commitdiff |
2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items... |
tree | commitdiff |
2017-03-30 |
gmungoc | JAL-2401 code and help tidy for review comments |
tree | commitdiff |
2017-03-30 |
gmungoc | JAL-2401 don't apply lower case colour to upper case |
tree | commitdiff |
2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour |
tree | commitdiff |
2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
tree | commitdiff |
2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups |
tree | commitdiff |
2017-03-29 |
gmungoc | JAL-2416 JAL-728 reduced dependency on Blosum62 impleme... |
tree | commitdiff |
2017-03-29 |
gmungoc | JAL-2416 revert to '*' not '-' in score matrix, handle... |
tree | commitdiff |
2017-03-29 |
gmungoc | JAL-2416 explicit constant for unknown/unknown identity... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2403 JAL-2416 pairwise score unexpected symbols... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2416 JAL-2403 remove unused '*' row/column from... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2403 further test coverage for ScoreMatrix, min... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2416 more test coverage of matrix parser |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 parse score matrices in either NCBI or AAindex... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 class Javadoc updates prior to parsing changes |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2468 change score model in PCAModel when switching |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 tidy up after switch from ' ' to '-' in score... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 score matrix gap symbol (if any) dynamically... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 tooltip with descriptions for score models... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 add score model description field for tooltip... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2403 SWDistanceModel now SmithWatermanModel - a... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 use '-' not space for gap in score matrices |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2428 unused method deleted |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2403 PIDDistanceModel deleted as superseded by... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2428 pass AlignmentView to TreeModel so Show Input... |
tree | commitdiff |
2017-03-24 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-03-24 |
gmungoc | JAL-2428 simplify TreeModel constructors, add getOrigin... |
tree | commitdiff |
2017-03-24 |
gmungoc | JAL-2428 use 'correct' name for selected score model |
tree | commitdiff |
2017-03-24 |
Jim Procter | JAL-2360 fix applet build by separating castor XML... |
tree | commitdiff |
next |