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Merge branch 'bug/JAL-2551' into bug/JAL-2034contextchange
[jalview.git]
/
src
/
2017-05-25
kiramt
Merge branch 'bug/JAL-2551' into bug/JAL-2034contextchange
tree
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commitdiff
2017-05-24
kiramt
JAL-2551 Fix to group colouring when group extent is...
bug/JAL-2551
tree
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commitdiff
2017-05-24
kiramt
JAL-2034 Added isDefined flag to SequenceGroup
tree
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commitdiff
2017-05-22
gmungoc
JAL-2504 update the right feature colour when creating...
bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-22
gmungoc
JAL-2544 check feature overlaps selection region
tree
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commitdiff
2017-05-22
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2256'...
tree
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commitdiff
2017-05-22
Jim Procter
JAL-2418 patch build - broken htsjdk import
tree
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commitdiff
2017-05-19
gmungoc
JAL-2526 removed redundant call to Sequence.findPosition()
tree
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commitdiff
2017-05-18
Jim Procter
JAL-2388 return empty hidden columns for fully visible...
tree
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commitdiff
2017-05-18
kiramt
JAL-2256 Corrected AllCols/Rows iterator behaviour...
bug/JAL-2256
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'bug/JAL-2510amendFeatures' into develop
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'features/JAL-2447experimentalFlag' into...
tree
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commitdiff
2017-05-17
gmungoc
JAL-2504 use (and update) defaults for new feature...
tree
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commitdiff
2017-05-17
gmungoc
Merge branch 'develop' into bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-16
gmungoc
JAL-2403 simplify instantiation / configuration of...
tree
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commitdiff
2017-05-16
kiramt
JAL-2522 Missed fix to applet
tree
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commitdiff
2017-05-16
kiramt
JAL-2388 Rationalised hashCode method in HiddenColumns
tree
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commitdiff
2017-05-15
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
tree
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commitdiff
2017-05-15
Jim Procter
JAL-2507 capitalisation for annotation lines generated...
tree
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commitdiff
2017-05-15
Jim Procter
JAL-2507 case insensitive recognition of annotation...
tree
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commitdiff
2017-05-15
gmungoc
JAL-2532 new feature types and colour changes from...
tree
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commitdiff
2017-05-15
Jim Procter
JAL-2535 quick hack to implement posterior probabilitie...
tree
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commitdiff
2017-05-15
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-15
kiramt
JAL-2388 Add missed optimisation
tree
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commitdiff
2017-05-15
Jim Procter
Merge branch 'features/JAL-2376_add-horizontal-bar...
tree
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commitdiff
2017-05-15
Jim Procter
JAL-2371 create a default ResidueShader when constructi...
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2435splitScreenFont' into...
tree
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commitdiff
2017-05-12
Jim Procter
JAL-2435 mirror antiAlias setting between cDNA and...
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
tree
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commitdiff
2017-05-12
Jim Procter
JAL-2388 checkbox in overview popup for applet
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2228_efficient_featurecounts...
tree
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commitdiff
2017-05-11
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
tree
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commitdiff
2017-05-11
Jim Procter
JAL-2509 JAL-2507 allow whitespace in GS annotation...
tree
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commitdiff
2017-05-11
Jim Procter
JAL-2507 test if an annotation is ‘whitespace’
tree
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commitdiff
2017-05-11
Jim Procter
JAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp...
tree
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commitdiff
2017-05-10
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-10
kiramt
JAL-2522 Fix to cursor scrolling
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2509 extend set of brackets recognised by stockholm...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 output secondary structure regardless of prese...
tree
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commitdiff
2017-05-09
gmungoc
JAL-1632 correct i18n and NPE
tree
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commitdiff
2017-05-09
kiramt
JAL-2388 Added checkbox to toggle hidden columns menu...
tree
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commitdiff
2017-05-08
gmungoc
JAL-1632 i18n for warning messages
tree
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commitdiff
2017-05-08
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2515'...
tree
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commitdiff
2017-05-08
kiramt
JAL-2515 Id panel in applet updated for NPE on urlProvider
bug/JAL-2515
tree
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commitdiff
2017-05-08
kiramt
JAL-2512 And applet
tree
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commitdiff
2017-05-08
kiramt
JAL-2512 Fix to show non-gap positions in None colour...
tree
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commitdiff
2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-05-05
gmungoc
JAL-964 JAL-2510 update Feature Settings from Amend...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-05-04
gmungoc
JAL-2506 allow graduated colour as default in new Seque...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2510 ensure modified feature type is displayed
tree
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commitdiff
2017-05-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2504 allow feature type to be specified for Create...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'develop' into features/JAL-2228_efficient...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
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commitdiff
2017-05-04
Jim Procter
fix for JAL-2509 - don’t replace all bracket types...
tree
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commitdiff
2017-05-04
Jim Procter
fix for JAL-2507 - resolve stockholm per residue annota...
tree
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commitdiff
2017-05-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2393 JAL-2416 refresh the score model menu when...
features/JAL-2393customMatrices
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2503 show threshold slider for quantitative annotat...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2503 AlignmentAnnotation.isQuantitative() test
tree
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commitdiff
2017-05-03
Jim Procter
Merge branch 'features/JAL-2432_annotbypercent' into...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-1933 JAL-2501 i18n for all auto calculated descriptions
features/JAL-2432_annotbypercent
tree
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commitdiff
2017-05-03
Jim Procter
JAL-1933 show occupancy in tooltip for row
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 honour percentage checkbox when entering value...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 applet: only enable percent checkbox when...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 percentage checkbox follows threshold value...
tree
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commitdiff
2017-05-03
gmungoc
JAL-2105 Ensembl REST now at 5.0
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 recover state for ‘display percentage’ checkbox
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 simplify code
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 validate CalculationChooser when selection...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 enable/disable CalculationChooser buttons...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 compare size of input against minimums for...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 OK->Calculate, Cancel->Close buttons
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 removed ‘tree’ option and changed dialog layout
tree
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commitdiff
2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'bug/JAL-2424getVisibleContigs' into develop
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 inlined two 1-line methods
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
tree
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commitdiff
2017-05-02
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2482 bug fix
tree
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2376 copied out patch from Phyre branch
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 use constant for preference token
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 consensus calculation doesn’t depend on occupa...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 desktop preferences for occupancy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 only create and add occupancy row to alignment...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fix: updated behaviour for SequenceGroup.findA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fixed behaviour for null parameters in line...
tree
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commitdiff
next