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better decoupling of data loading routines for AJAX
[jalview.git] / src /
2008-11-12 jprocteravoid exception if search returns valid object but... tree | commitdiff
2008-11-12 jprocternew copy constructor and intersect method tree | commitdiff
2008-11-12 jprocterinvolvesSequence to check if searchResults intersect... tree | commitdiff
2008-11-12 jprocterjavadoc and new method to get alignment sequence index... tree | commitdiff
2008-11-04 jprocterbugfix db ref retrieve routine so it removes dead query... tree | commitdiff
2008-11-04 jprocterimplemented embl validation properly tree | commitdiff
2008-11-04 jprocterimplemented embl validation properly tree | commitdiff
2008-11-04 jprocterbeginning of implementation of new properties for hide... tree | commitdiff
2008-11-04 jprocterbugfix for transfer of user defined colourscheme from... tree | commitdiff
2008-11-04 jprocterapplication specific validIOformat method tree | commitdiff
2008-09-24 jprocterfixed sequence associated annotation reading bug where... tree | commitdiff
2008-09-16 jprocterjava 1.1 compatibility tree | commitdiff
2008-09-16 jprocterfix exception raised when JNet concise files with no... tree | commitdiff
2008-09-09 jprocterlinks associated with non-positional features do not... tree | commitdiff
2008-09-09 jproctershow non-positional features with same code as positona... tree | commitdiff
2008-09-09 jprocterrefactored feature tooltip generation code to static... tree | commitdiff
2008-09-09 jprocternon-positional features are displayed with additional... tree | commitdiff
2008-09-09 jproctertooltip contains non-positional features and popup... tree | commitdiff
2008-09-09 jproctermake URL links from description string when link is... tree | commitdiff
2008-09-08 jprocterview settings in view submenu and user preferences... tree | commitdiff
2008-09-08 jprocterintroduced and commented out code for generating URLs... tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2008-08-27 jprocterno newline after licence comment tree | commitdiff
2008-08-26 jprocterupdate Jpred3 service referenec tree | commitdiff
2008-08-26 jprocterallow '|' to be entered in URL text box and added regex... tree | commitdiff
2008-08-26 jprocterset title of viewer frame after file has been loaded... tree | commitdiff
2008-08-26 jprocterfuture bug fix todo tree | commitdiff
2008-08-26 jprocternew thread for initting of DBRefFetcher with latest... tree | commitdiff
2008-08-26 jprocteruses shared singleton from jalview.gui.SequenceFetcher... tree | commitdiff
2008-08-26 jprocteradded singleton access method to retrieve the latest... tree | commitdiff
2008-08-26 jprocterbugfix todo for the 'edit sequence' command tree | commitdiff
2008-08-26 jproctertooltip for fetch db refs and more generic regex for... tree | commitdiff
2008-08-26 jprocterpdb xrefs added as dbrefs and as PDB file links tree | commitdiff
2008-08-26 jprocterensure successive matches to a regex have distinct... tree | commitdiff
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation... tree | commitdiff
2008-08-20 jproctertooltip displays formatted annotation row description... tree | commitdiff
2008-08-19 jprocterbeginning of fix for embl/cds/highlighting IO in https... tree | commitdiff
2008-08-19 jprocterfix for arrayoutofbounds bug when secondary structure... tree | commitdiff
2008-08-19 jprocterbetter check for molecule type when identifying interna... tree | commitdiff
2008-08-19 jprocterregex links for launching URL from single click on... tree | commitdiff
2008-08-15 jprocterupdate text and version checker tree | commitdiff
2008-08-15 jprocterdialog size on macs tree | commitdiff
2008-08-15 jproctercheck for crossreferences every time the menus are... tree | commitdiff
2008-08-15 jproctercatch invalid URL link exception properly tree | commitdiff
2008-08-15 jprocterincrease height of dialog tree | commitdiff
2008-08-15 jprocterallow '|' in regex for URL links to be recovered from... tree | commitdiff
2008-08-15 jproctersafer copy constructor tree | commitdiff
2008-08-15 jprocterxrefs retrieved from Uniprot tree | commitdiff
2008-08-13 jproctercheck for null viewport on dataset recovery tree | commitdiff
2008-08-13 jprocterensure input data can be recovered for tree and PCA... tree | commitdiff
2008-08-13 jprocterdo not try to cancel jobs that cannot be cancelled tree | commitdiff
2008-08-12 jprocteradded nojmol parameter to disable check for jmol tree | commitdiff
2008-08-11 jprocterregular expression based URL link generation tree | commitdiff
2008-08-11 jprocterEnsure 'None' translates into no colour scheme applied tree | commitdiff
2008-08-06 jproctergeneration of additional URLs for DBRefs on a sequence... tree | commitdiff
2008-08-06 jprocterextra checks for datasetsequence for when getDbRefs... tree | commitdiff
2008-08-06 jproctergetDBRefs now always returns DBRefArray if it exists... tree | commitdiff
2008-08-05 jprocternew vamsas session does not open a dialog box tree | commitdiff
2008-08-05 jprocterensure das sequence sources are refreshed when das... tree | commitdiff
2008-08-05 jproctershowbutton default is true tree | commitdiff
2008-08-04 jprocterstackoverflow fix tree | commitdiff
2008-08-04 jprocterpfam seed and full alignment retrieval and nicer orderi... tree | commitdiff
2008-08-04 jprocteradded 'showbutton' applet parameter tree | commitdiff
2008-08-01 jprocternew SequenceFetcher gui and visual delay indication... tree | commitdiff
2008-08-01 jprocterupdated jalview version of dasobert 1.53e client and... tree | commitdiff
2008-08-01 jproctertodo tree | commitdiff
2008-08-01 jprocterinterface for windows that display progress bars tree | commitdiff
2008-07-31 jprocteruse canonical DbSource name in GUI box, and ensure... tree | commitdiff
2008-07-31 jprocterrefactored method for registering instance of a dbSourc... tree | commitdiff
2008-07-31 jprocterquick fix for the new uniprot name schema - description... tree | commitdiff
2008-07-31 jprocteradded specific retrieval arguments to SequneceFetcher... tree | commitdiff
2008-07-18 jprocterresolve 1:many mappings for sequence associated annotat... tree | commitdiff
2008-07-18 jprocterresolve 1:many mappings from feature sequence ID to... tree | commitdiff
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in... tree | commitdiff
2008-07-18 jprocterSequence label colour stored for each sequence group tree | commitdiff
2008-07-18 jproctercomment tree | commitdiff
2008-07-18 jprocterannotation file format updated to take idColour and... tree | commitdiff
2008-07-18 jprocterSequence label colour stored for each sequence group tree | commitdiff
2008-07-18 jprocterUser defined colourschemes are automatically generated... tree | commitdiff
2008-07-18 jprocterprevent exception when no default timeout is specified tree | commitdiff
2008-07-11 jprocterensure annotationElements in non-graphical annotation... tree | commitdiff
2008-06-30 jprocterjavadoc and constraint to ensure annotation labels... tree | commitdiff
2008-06-30 jprocterjava 1.1 compatibility tree | commitdiff
2008-06-30 jproctertiming of 'on load' output before any gui thread operations tree | commitdiff
2008-06-30 jproctersafer retrieval of groovy scripts from URLs tree | commitdiff
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio... tree | commitdiff
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded... tree | commitdiff
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar... tree | commitdiff
2008-05-26 jprocterUniprot is not actually a multi-acc capable source... tree | commitdiff
2008-05-26 jprocterbugfix so MULTI_ACC capable sources value property... tree | commitdiff
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are... tree | commitdiff
2008-05-12 jprocterfixed Jalview project archive bug where alignment view... tree | commitdiff
2008-05-02 jprocterbugfix to avoid null pointer exceptions being raised... tree | commitdiff
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc... tree | commitdiff
2008-04-29 jproctercomments and version wget ping timeout fix for when... tree | commitdiff
2008-04-29 jprocteradded SeqSearch service interface. Documented and refac... tree | commitdiff
2008-04-29 jproctertrial fix for parsing NHX style trees to extract the... tree | commitdiff
2008-04-25 jprocterpotential fix for hang on opening of application window... tree | commitdiff
2008-04-21 jprocterdocumented and refactored to facilitate headless featur... tree | commitdiff
2008-04-21 jprocteradded centre annotation labels menu entry (and commente... tree | commitdiff
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