better decoupling of data loading routines for AJAX
[jalview.git] / src /
2008-11-12 jprocteravoid exception if search returns valid object but...
2008-11-12 jprocternew copy constructor and intersect method
2008-11-12 jprocterinvolvesSequence to check if searchResults intersect...
2008-11-12 jprocterjavadoc and new method to get alignment sequence index...
2008-11-04 jprocterbugfix db ref retrieve routine so it removes dead query...
2008-11-04 jprocterimplemented embl validation properly
2008-11-04 jprocterimplemented embl validation properly
2008-11-04 jprocterbeginning of implementation of new properties for hide...
2008-11-04 jprocterbugfix for transfer of user defined colourscheme from...
2008-11-04 jprocterapplication specific validIOformat method
2008-09-24 jprocterfixed sequence associated annotation reading bug where...
2008-09-16 jprocterjava 1.1 compatibility
2008-09-16 jprocterfix exception raised when JNet concise files with no...
2008-09-09 jprocterlinks associated with non-positional features do not...
2008-09-09 jproctershow non-positional features with same code as positona...
2008-09-09 jprocterrefactored feature tooltip generation code to static...
2008-09-09 jprocternon-positional features are displayed with additional...
2008-09-09 jproctertooltip contains non-positional features and popup...
2008-09-09 jproctermake URL links from description string when link is...
2008-09-08 jprocterview settings in view submenu and user preferences...
2008-09-08 jprocterintroduced and commented out code for generating URLs...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-27 jprocterno newline after licence comment
2008-08-26 jprocterupdate Jpred3 service referenec
2008-08-26 jprocterallow '|' to be entered in URL text box and added regex...
2008-08-26 jprocterset title of viewer frame after file has been loaded...
2008-08-26 jprocterfuture bug fix todo
2008-08-26 jprocternew thread for initting of DBRefFetcher with latest...
2008-08-26 jprocteruses shared singleton from jalview.gui.SequenceFetcher...
2008-08-26 jprocteradded singleton access method to retrieve the latest...
2008-08-26 jprocterbugfix todo for the 'edit sequence' command
2008-08-26 jproctertooltip for fetch db refs and more generic regex for...
2008-08-26 jprocterpdb xrefs added as dbrefs and as PDB file links
2008-08-26 jprocterensure successive matches to a regex have distinct...
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation...
2008-08-20 jproctertooltip displays formatted annotation row description...
2008-08-19 jprocterbeginning of fix for embl/cds/highlighting IO in https...
2008-08-19 jprocterfix for arrayoutofbounds bug when secondary structure...
2008-08-19 jprocterbetter check for molecule type when identifying interna...
2008-08-19 jprocterregex links for launching URL from single click on...
2008-08-15 jprocterupdate text and version checker
2008-08-15 jprocterdialog size on macs
2008-08-15 jproctercheck for crossreferences every time the menus are...
2008-08-15 jproctercatch invalid URL link exception properly
2008-08-15 jprocterincrease height of dialog
2008-08-15 jprocterallow '|' in regex for URL links to be recovered from...
2008-08-15 jproctersafer copy constructor
2008-08-15 jprocterxrefs retrieved from Uniprot
2008-08-13 jproctercheck for null viewport on dataset recovery
2008-08-13 jprocterensure input data can be recovered for tree and PCA...
2008-08-13 jprocterdo not try to cancel jobs that cannot be cancelled
2008-08-12 jprocteradded nojmol parameter to disable check for jmol
2008-08-11 jprocterregular expression based URL link generation
2008-08-11 jprocterEnsure 'None' translates into no colour scheme applied
2008-08-06 jproctergeneration of additional URLs for DBRefs on a sequence...
2008-08-06 jprocterextra checks for datasetsequence for when getDbRefs...
2008-08-06 jproctergetDBRefs now always returns DBRefArray if it exists...
2008-08-05 jprocternew vamsas session does not open a dialog box
2008-08-05 jprocterensure das sequence sources are refreshed when das...
2008-08-05 jproctershowbutton default is true
2008-08-04 jprocterstackoverflow fix
2008-08-04 jprocterpfam seed and full alignment retrieval and nicer orderi...
2008-08-04 jprocteradded 'showbutton' applet parameter
2008-08-01 jprocternew SequenceFetcher gui and visual delay indication...
2008-08-01 jprocterupdated jalview version of dasobert 1.53e client and...
2008-08-01 jproctertodo
2008-08-01 jprocterinterface for windows that display progress bars
2008-07-31 jprocteruse canonical DbSource name in GUI box, and ensure...
2008-07-31 jprocterrefactored method for registering instance of a dbSourc...
2008-07-31 jprocterquick fix for the new uniprot name schema - description...
2008-07-31 jprocteradded specific retrieval arguments to SequneceFetcher...
2008-07-18 jprocterresolve 1:many mappings for sequence associated annotat...
2008-07-18 jprocterresolve 1:many mappings from feature sequence ID to...
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-07-18 jproctercomment
2008-07-18 jprocterannotation file format updated to take idColour and...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-07-18 jprocterUser defined colourschemes are automatically generated...
2008-07-18 jprocterprevent exception when no default timeout is specified
2008-07-11 jprocterensure annotationElements in non-graphical annotation...
2008-06-30 jprocterjavadoc and constraint to ensure annotation labels...
2008-06-30 jprocterjava 1.1 compatibility
2008-06-30 jproctertiming of 'on load' output before any gui thread operations
2008-06-30 jproctersafer retrieval of groovy scripts from URLs
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio...
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded...
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar...
2008-05-26 jprocterUniprot is not actually a multi-acc capable source...
2008-05-26 jprocterbugfix so MULTI_ACC capable sources value property...
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are...
2008-05-12 jprocterfixed Jalview project archive bug where alignment view...
2008-05-02 jprocterbugfix to avoid null pointer exceptions being raised...
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc...
2008-04-29 jproctercomments and version wget ping timeout fix for when...
2008-04-29 jprocteradded SeqSearch service interface. Documented and refac...
2008-04-29 jproctertrial fix for parsing NHX style trees to extract the...
2008-04-25 jprocterpotential fix for hang on opening of application window...
2008-04-21 jprocterdocumented and refactored to facilitate headless featur...
2008-04-21 jprocteradded centre annotation labels menu entry (and commente...
next