experiment with reinstating the sandbox permissions
[jalview.git] / src /
2012-12-17 Natashatest for output a file in Stockholm format
2012-12-12 NatashaOutput accession number for file in stockholm format
2012-12-11 jprocterJAL-1217 check and avoid NPE if no datastore object...
2012-12-11 jprocterJAL-1217 report exception for service when no datastore...
2012-11-23 Natashastockholm file output code developed by Natasha Sherstneva
2012-11-15 Paolo Di TommasoFixed T-Coffee file scores parser to support extended...
2012-11-09 jprocterconstructor takes settings from any existing feature...
2012-11-08 jprocterJAL-1193 ensure the 'loadedComplete' method gets called...
2012-11-08 jprocterremember to close input file!
2012-11-08 jproctertidy imports
2012-11-07 jprocterJAL-957 manual update to applet authorlist - need to...
2012-10-24 jprocterJAL-1193 call setLoadingFromArchiveFinished(true) for...
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch...
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr...
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources...
2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$...
2012-10-04 jprocterJAL-1064 JAL-671 make sure all buttons are disabled...
2012-10-03 jprocterformatting
2012-10-03 jprocterformatting
2012-10-03 jprocterJAL-1026 - insert a sensible default for proxy so Jalvi...
2012-10-03 jprocterJAL-1183 JAL-343 - use dialog queue for JABA warning...
2012-10-02 jprocterJAL-1185 patch NPE - create new group for subtree on...
2012-10-01 jprocterJAL-1130 JAL-1137 messy hardcoding of author list to...
2012-10-01 jprocterJAL-1130 JAL-1139 hardcode preferred height to logo...
2012-10-01 jprocterJAL-1130 more robust loading code and different logos...
2012-10-01 jprocterJAL-1183 dialog thread is only started after the splash...
2012-10-01 jprocterJAL-1111 dialog flickers whilst example file starts...
2012-10-01 jprocterJAL-1184 apparent deadlock when launching jalview on...
2012-10-01 jprocterJAL-1183 showNews adds news discovery and display threa...
2012-10-01 jprocterJAL-1183 use dialog queue for usage statistics prompt
2012-10-01 jprocterJAL-1183 dialog queue
2012-09-27 jprocterJAL-1030 patch typo
2012-09-27 jprocterJAL-1179 - regression from JAL-1030 patch implicitly...
2012-09-25 jprocterJAL-1031 allow empty selections to pass through to...
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when...
2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty...
2012-09-25 jprocterJAL-1010 write validated value back to text field to...
2012-09-25 jprocterJAL-1173 - trap redraw buffer OOM errors. needs a test...
2012-09-25 jprocterJAL-1173 try to catch OOMs when loading annotation...
2012-09-24 jprocterJAL-958 revised applet parameter documentation to stand...
2012-09-24 jprocterformatting
2012-09-24 jprocterJAL-958 normalise logo menu options in applet
2012-09-24 jprocterJAL-958 enable logo display when normalise option selected
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
2012-09-24 jprocteronly recalc group conservation after last sequence...
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated...
2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to...
2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global...
2012-09-21 jprocterJAL-1165 visual delay whilst results are processed.
2012-09-21 jprocterJAL-1165 allow progress indicators on the web service...
2012-09-21 jprocterJAL-1130 jalview spinning icon for web service dialog
2012-09-21 jprocterJAL-1130 splashscreen logo
2012-09-19 jprocterJAL-1130 new logo in help, splash screen and web servic...
2012-09-19 jprocterJAL-1130 new logo spinner in webservices status window
2012-09-19 jprocterJAL-1130 made SplashScreen able to be a dialog that...
2012-09-19 jprocterJAL-1130 refactored standard hyperlink handler code...
2012-09-19 jprocterJAL-1130 trial view of new logo on splashscreen.
2012-09-19 jprocterJAL-1170 column and row positions confused in implement...
2012-09-06 jprocterJAL-958 flag indicating if visualization settings for...
2012-09-06 jprocterJAL-958 store/recover normalised flag
2012-09-06 jprocterJAL-958 store normalised flag in jalview project
2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA...
2012-09-06 jprocterJAL-1013 - employ index parameter rather than hardcode...
2012-09-06 jprocterJAL-1167 method and simple tests for printing score...
2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition
2012-09-05 jprocterJAL-1136 give pre-existing custom settings a special...
2012-09-05 jprocterformatting
2012-09-05 jprocterpatch for NPE when no services are available to resolve...
2012-09-05 jprocterJAL-975 null any existing preset if user has supplied...
2012-09-05 jprocterJAL-1162 catch security exception and just use bare...
2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run
2012-09-05 jprocterJAL-1111 allow news reader window to be moved even...
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
2012-09-04 jprocteroff by one for sequence associated annotation
2012-09-04 jprocterunused variable
2012-09-04 jprocterJAL-974 JRonn thresholds
2012-09-03 jprocterJAL-591 adapt option layout to width of dialog box
2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after...
2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotati...
2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor
2012-09-03 jprocterJAL-1111 news reader shouldn't be modal.
2012-09-03 jprocterJAL-1111 doh - helps if you pass modality flag onto...
2012-09-02 jprocterJAL-812 only trigger alignment redraw and calculation...
2012-09-02 jprocterJAL-1007 refactored code and patched calculation bug
2012-09-02 jprocterJAL-1158 - request focus after opening window.
2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcin...
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved...
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen...
2012-09-01 jprocterJAL-1075 sort nodes alphabetically
2012-09-01 jprocterJAL-1160 support horizontal mouse wheel scrolling events
2012-09-01 jprocterJAL-1161 JAL-1160 implement custom mousewheel listener...
2012-09-01 jprocterjavadoc
2012-08-31 jprocterJAL-1015 equivalent menu items for applet - not visible...
2012-08-31 jprocterJAL-1015 new menu items in desktop popup menu for creat...
2012-08-31 jprocterJAL-1015 resolve dataset sequence before searching...
2012-08-31 jprocterJAL-1157 new window for displaying HTML formatted text...
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