git://source.jalview.org / jalview.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-4313 Patch AnnotationsMatcher to match nulls
[jalview.git] / src /
2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug tree | commitdiff
2022-03-25 Jim ProcterJAL-3981 Additional line breaks - sort of helps tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Create ws2 client for slivka services tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Add builders to each service parameter class tree | commitdiff
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's... tree | commitdiff
2022-03-24 Mateusz WarownyJAL-3878 Create service agnostic param datastore and set tree | commitdiff
2022-03-23 Mateusz WarownyJAL-3878 Create beans for un/marshalling service parameters tree | commitdiff
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing tree | commitdiff
2022-03-18 Ben SoaresJAL-3978 Using getdowninstanceappdir and getdowninstanc... tree | commitdiff
2022-03-18 Ben SoaresJAL-3978 New tasks to build archive 'old' dir with... tree | commitdiff
2022-03-18 Mateusz WarownyJAL-3878 Create abstract ws discoverer providing common... tree | commitdiff
2022-03-15 Mateusz WarownyJAL-3878 Connect alignment services with gui tree | commitdiff
2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils tree | commitdiff
2022-03-11 Mateusz WarownyJAL-3878 Create web service menu manager. tree | commitdiff
2022-03-11 Mateusz WarownyJAL-3878 Add hasPresets and hasParameters utility metho... tree | commitdiff
2022-03-09 Mateusz WarownyJAL-3878 Add WebServiceProviderI - a view of services. tree | commitdiff
2022-03-09 Mateusz WarownyJAL-3878 Improve performance of gap sequence construction. tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names tree | commitdiff
2022-03-08 Mateusz WarownyJAL-3878 Add web service reference to actions. tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... tree | commitdiff
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property tree | commitdiff
2022-03-04 Mateusz WarownyJAL-3878 Change visibility of WebService methods to... tree | commitdiff
2022-03-03 Mateusz WarownyJAL-3878 Create alignment service "backend" classes tree | commitdiff
2022-03-03 Mateusz WarownyJAL-3878 Remove unused JobStatus methods tree | commitdiff
2022-03-03 Mateusz WarownyJAL-3878 Create abstract base classes for non-interacti... tree | commitdiff
2022-03-02 Jim ProcterMerge branch 'benreview/JAL-3691_for_2_11_2_getdownrebu... tree | commitdiff
2022-03-02 Mateusz WarownyJAL-3878 Fix typo in method name (getAlignemnt) tree | commitdiff
2022-03-02 Mateusz WarownyJAL-3878 Add serviceExecutor to AlignmentViewport. tree | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly... tree | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to... tree | commitdiff
2022-02-28 Mateusz WarownyJAL-3878 Separate server job handle from task's sub... tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Provide javadoc for WebServiceClientI interface tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Create skeleton for alignment service action tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Create abstract base class for actions. tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Fix typo in getTooltip method name tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Move WebServiceJob class to jalview.ws2.api... tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Move CredentialType class to jalview.ws2.api... tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Create TaskEventListener interface. tree | commitdiff
2022-02-18 Mateusz WarownyJAL-3878 Create action and task interfaces. tree | commitdiff
2022-02-17 Mateusz WarownyJAL-3878 Add interactive flag to WebService class tree | commitdiff
2022-02-17 Mateusz WarownyJAL-3878 Create web service class - container for servi... tree | commitdiff
2022-02-17 Mateusz WarownyJAL-3878 Add WebServiceJob class. tree | commitdiff
2022-02-17 Jim ProcterJAL-3959 add key retrieval urls that support CORS neede... tree | commitdiff
2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for... tree | commitdiff
2022-02-16 Jim ProcterJAL-3551 - wrap pair_fit with undo_disable and undo_enable tree | commitdiff
2022-02-16 Mateusz WarownyJAL-3878 Add interfaces for classes dealing with server... tree | commitdiff
2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and... tree | commitdiff
2022-02-16 Jim ProcterJAL-3949 report Pymol XMLRPC port via log.info tree | commitdiff
2022-02-15 Mateusz WarownyJAL-3878 Add universal id generator to MathUtils. tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 backbone type parameter for configuring which... tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating... tree | commitdiff
2022-02-15 Jim ProcterJAL-3906 use indicate to highlight current mousedOver... tree | commitdiff
2022-02-14 Jim ProcterMerge branch 'task/r_2_11_2/JAL-3956_alphaFill_authorit... tree | commitdiff
2022-02-14 Jim ProcterJAL-3551 tree | commitdiff
2022-02-14 Jim ProcterJAL-3956 - PDBEntry objects constructed from 3D-Beacons... tree | commitdiff
2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu... tree | commitdiff
2022-02-11 Jim ProcterJAL-3931 fix - escape % symbols after urlencoding tree | commitdiff
2022-02-11 Ben SoaresMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu... tree | commitdiff
2022-02-11 Ben SoaresJLogger loglevel check on whether to call the actual... tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 read ~/.jalview_properties before initialising... tree | commitdiff
2022-02-11 Ben SoaresMerge branch 'develop' into update/JAL-3949_abstracted_... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2022-02-07 Jim ProcterJAL-3186 remove ‘Variable Colour’ from the sequence... tree | commitdiff
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no... tree | commitdiff
2022-02-04 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence_for211... bug/JAL-3806_without_shared_DS_for_2_11_2 tree | commitdiff
2022-02-04 Jim ProcterJAL-3806 require mapping extent covers both sequence... tree | commitdiff
2022-02-03 Jim ProcterJAL-3806 use the covers() test for each selected sequen... tree | commitdiff
2022-02-03 Jim ProcterJAL-3806 use same logic as for mouse over highlighting... tree | commitdiff
2022-02-03 Jim ProcterJAL-3806 todo - problem seems to be Protein:Many CDS... tree | commitdiff
2022-02-03 Jim ProcterJAL-2305 comments re testFindXrefSequences_withFetch... tree | commitdiff
2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop tree | commitdiff
2022-01-28 Ben SoaresMerge branch 'develop' into JAL-3416_different_look_and... tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into... tree | commitdiff
2022-01-26 gmungocJAL-3806 (2.11.2 version) more lax allowance (3 positio... tree | commitdiff
2022-01-26 Jim ProcterJAL-3806 JAL-3725 propagate relaxed criteria for stop... tree | commitdiff
2022-01-26 gmungocJAL-3725 restrict mapped virtual feature location to... tree | commitdiff
2022-01-26 gmungocJAL-3725 helper methods for computing mapped feature... tree | commitdiff
2022-01-26 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping tree | commitdiff
2022-01-17 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded... tree | commitdiff
2022-01-17 Ben Soaresclose filehandles straight after parse, without setting... tree | commitdiff
2022-01-11 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded... tree | commitdiff
2022-01-11 Ben Soaresclose filehandles straight after parse, without setting... tree | commitdiff
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat... tree | commitdiff
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat... tree | commitdiff
2021-12-22 Ben SoaresMerge branch 'develop' into critical/JAL-3933_log4j_upd... tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to... tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to... tree | commitdiff
next