Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
[jalview.git] / src /
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create...
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types...
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota...
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat...
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into...
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value...
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when...
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value...
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox
2017-05-03 Jim ProcterJAL-2432 simplify code
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection...
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons...
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for...
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop
2017-05-02 gmungocJAL-2499 inlined two 1-line methods
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuJAL-2482 bug fix
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA...
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line...
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide...
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for...
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ...
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-04-25 tcofoegbuJAL-2489 bug fix
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread...
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped...
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row...
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header...
2017-04-19 tcofoegbuJAL-2482 added null check
2017-04-18 tcofoegbuJAL-2482 Bugfix
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree...
2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable
2017-04-12 gmungocJAL-2403 public static methods to convert distance...
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel...
2017-04-11 tcofoegbuPull from develop features/JAL-2473_set-minimium-dimensions
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira...
2017-04-11 tcofoegbuJAL-2473 removed unused fields in JalviewDialog
2017-04-11 gmungocJAL-2428 Javadoc
2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur...
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher...
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA
2017-04-10 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-10 tcofoegbuJAL-2473 added improvement to apply default / custom...
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour...
2017-04-09 gmungocJAL-2393 remove unused commented code
2017-04-07 gmungocJAL-2393 code tidying for review comments
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check...
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of...
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but...
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour...
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461
2017-03-31 gmungocJAL-2405 additional checks for circular reference in...
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items...
2017-03-30 gmungocJAL-2401 code and help tidy for review comments
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
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