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jga browser string: java/version (arch; os version)
[jalview.git]
/
src
/
2009-08-21
jprocter
1.1 compatibility
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commitdiff
2009-08-21
jprocter
render sequence logo over consensus histogram
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commitdiff
2009-08-21
jprocter
single-click highlights, double click selectes th assoc...
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commitdiff
2009-08-21
jprocter
group consensus/conservation calculated from start...
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commitdiff
2009-08-21
jprocter
viewport setting for displaying sequence logos
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commitdiff
2009-08-21
jprocter
reversed order of addition of group consensus and conse...
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commitdiff
2009-08-21
jprocter
prototype make groups from selection function and shift...
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commitdiff
2009-08-21
jprocter
prototype make groups from selection function
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commitdiff
2009-08-21
jprocter
new sortbyPID for specific start/end region
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commitdiff
2009-08-21
jprocter
race condition null pointer bugfix
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commitdiff
2009-08-21
jprocter
bugfix
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commitdiff
2009-08-21
jprocter
todo for 2.5
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commitdiff
2009-08-21
jprocter
null pointer exception bug fix
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commitdiff
2009-08-21
jprocter
commented debug lines indicating calculation progress
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commitdiff
2009-08-21
jprocter
start/stop for per-group consensus calculation
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commitdiff
2009-08-21
jprocter
store symbol profile and extract it for display
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commitdiff
2009-08-21
jprocter
pir format ambiguity and todo regarding 'format overrid...
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commitdiff
2009-08-21
jprocter
basic implementation of profile display and todos
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commitdiff
2009-08-21
jprocter
todo
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commitdiff
2009-08-21
jprocter
routines for creating groups over an alignment
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commitdiff
2009-08-21
jprocter
asparagine is polar but not charged
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commitdiff
2009-08-03
jprocter
fix feature creation for selected region beyond end...
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commitdiff
2009-07-24
jprocter
explicitly grab all permissions for application executi...
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commitdiff
2009-07-24
jprocter
update annotation when group state is changed
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commitdiff
2009-07-24
jprocter
show group annotation menu entries
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commitdiff
2009-07-24
jprocter
colour by label prototype flag
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commitdiff
2009-07-24
jprocter
catch null pointer exception in headless context
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commitdiff
2009-07-24
jprocter
get consensus sequence and set ignore gaps flag for...
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commitdiff
2009-07-24
jprocter
annotation update method synchronises group annotation
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commitdiff
2009-07-24
jprocter
headless warning messages, prototype group annotation...
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commitdiff
2009-07-24
jprocter
refactored conservation thread, added showgroupannotati...
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commitdiff
2009-07-24
jprocter
conservation thread refactored from AlignViewport
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commitdiff
2009-07-24
jprocter
feature colour by label flag/style
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commitdiff
2009-07-24
jprocter
headless test
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commitdiff
2009-07-24
jprocter
todo
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commitdiff
2009-07-24
jprocter
implement new insert annotation row method and ensure...
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commitdiff
2009-07-24
jprocter
insert annotation at specific position
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commitdiff
2009-07-24
jprocter
optional sequencegroup ref for annotation row
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commitdiff
2009-07-24
jprocter
sequence groups carry their own conservation and consen...
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commitdiff
2009-07-24
jprocter
complete alignment annotation row procedure
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commitdiff
2009-06-24
jprocter
ensure annotation row height is honoured for new VAMSAS...
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commitdiff
2009-06-24
jprocter
all alignment sequences associated with a dataset seque...
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commitdiff
2009-06-24
jprocter
can use whitespace, comma or semicolon to separate IDs
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commitdiff
2009-06-24
jprocter
fix to cope with EMBL records containing a CDS fragment...
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commitdiff
2009-06-24
jprocter
take the average of the three consecutive codon sites...
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commitdiff
2009-06-19
jprocter
implementation error warning todo
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commitdiff
2009-06-19
jprocter
debug and cyclefix for dbrefs with embedded sequences
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commitdiff
2009-06-19
jprocter
javadoc and datastoreitem registry support for binding...
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commitdiff
2009-06-19
jprocter
more efficient synchronized methods
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commitdiff
2009-06-19
jprocter
bugfix mapped reference transfer and made picr ID retri...
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commitdiff
2009-06-19
jprocter
selection handler and sender bugfix
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commitdiff
2009-06-19
jprocter
todo
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commitdiff
2009-06-19
jprocter
selections sent when mouse is released (drags on ID...
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commitdiff
2009-06-19
jprocter
progress bars (still need to be threaded properly)...
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commitdiff
2009-06-19
jprocter
smoother scroll-to-position action
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commitdiff
2009-06-19
jprocter
drag'n'drop a URL on to an alignment
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commitdiff
2009-06-19
jprocter
parent db references and mappings added to retrieved...
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commitdiff
2009-06-19
jprocter
intersect did not intersect (used in selection listener)
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commitdiff
2009-06-19
jprocter
regex validator for uniprot
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commitdiff
2009-06-19
jprocter
usepicr config property
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commitdiff
2009-06-19
jprocter
debug
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commitdiff
2009-06-19
jprocter
debug comments
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commitdiff
2009-06-19
jprocter
new coverage comparison - no test case in main method yet
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commitdiff
2009-06-12
jprocter
synching of all db references and sequence features
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commitdiff
2009-06-12
jprocter
prevent dbref->map->to->datasetsequence->dbref-> type...
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commitdiff
2009-06-12
jprocter
reinstate links on features
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commitdiff
2009-06-12
jprocter
datastore registration and class cast exception fix
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commitdiff
2009-06-12
jprocter
prevent and keep track of which objects handling elemen...
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commitdiff
2009-06-12
jprocter
numerous bugfixs (tree panel synchs) and DatastoreRegis...
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commitdiff
2009-06-12
jprocter
methods for importing anonymous vamsas documents into...
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commitdiff
2009-06-12
jprocter
nullpointer bugfix (possibly not needed - was an error...
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commitdiff
2009-06-12
jprocter
recover pdb from jalview-xml in vamsas doc
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commitdiff
2009-06-12
jprocter
send selection on drag over sequence ids
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commitdiff
2009-06-12
jprocter
retrieve and init vamsas session from vdoc at URL
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commitdiff
2009-06-12
jprocter
reinstated blind querying of datasources. Transfer...
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commitdiff
2009-06-12
jprocter
more ID validation
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commitdiff
2009-06-12
jprocter
javadoc
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commitdiff
2009-06-10
jprocter
com.boxysystems.jgogleanalytics is now an optional...
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commitdiff
2009-06-09
jprocter
fix null pointer when new view is created then closed...
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commitdiff
2009-06-09
jprocter
fix null pointer when new view created on alignment...
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commitdiff
2009-06-08
jprocter
*experimental use of picr* apply gpl development license
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commitdiff
2009-06-08
jprocter
clargs documentation, new vamsas session import and...
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commitdiff
2009-06-08
jprocter
refactored public methods for non-interactive import...
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commitdiff
2009-06-08
jprocter
refactored for non-interactive import and initiation...
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commitdiff
2009-06-08
jprocter
sequence scores only shown if they vary. shift stops...
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commitdiff
2009-06-08
jprocter
debug messages and graceful recovery when structure...
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commitdiff
2009-06-08
jprocter
better thread safety for tooltip. apply gpl development...
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commitdiff
2009-06-08
jprocter
ensure listeners are deregistered when panel is closed...
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commitdiff
2009-06-08
jprocter
ensure listeners are deregistered when panel is closed...
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commitdiff
2009-06-08
jprocter
ga tracker option and apply gpl development license
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2009-06-08
jprocter
minor optimization. apply gpl development license
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commitdiff
2009-06-08
jprocter
patch for wierd format header lines and apply gpl devel...
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commitdiff
2009-06-01
jprocter
more graduated feature support
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commitdiff
2009-06-01
jprocter
properly export graduated colour features
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commitdiff
2009-06-01
jprocter
prototype function for relabelling treenodes with diffe...
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commitdiff
2009-06-01
jprocter
better tooltip placement in alignment window
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commitdiff
2009-06-01
jprocter
added graduated colourscheme support for feature file
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commitdiff
2009-06-01
jprocter
better decoupling of data loading routines for AJAX
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commitdiff
2009-06-01
jprocter
first experiment with GA application use tracking
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commitdiff
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