debug

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index 7002f07..d7a3175 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -286,7 +286,7 @@ public class CrossRef
           // xrefs on this sequence.\r
           if (dataset != null)\r
           {\r
-            found |= searchDataset(dss, xrfs[r], dataset, rseqs, cf);\r
+            found |= searchDataset(dss, xrfs[r], dataset, rseqs, cf); // ,false,!dna);\r
             if (found)\r
               xrfs[r] = null; // we've recovered seqs for this one.\r
           }\r
@@ -512,16 +512,16 @@ public class CrossRef
           }\r
 \r
           // look for direct or indirect references in common\r
-          DBRefEntry[] poss = null, cands = null;\r
+          DBRefEntry[] poss = nxt.getDBRef(), cands = null;\r
           if (direct)\r
           {\r
-            cands = jalview.util.DBRefUtils.searchRefs(poss = nxt\r
-                    .getDBRef(), xrf);\r
+            cands = jalview.util.DBRefUtils.searchRefs(poss , xrf);\r
           }\r
           else\r
           {\r
-            cands = jalview.util.DBRefUtils.searchRefs(poss = CrossRef\r
-                    .findXDbRefs(dna, nxt.getDBRef()), xrf);\r
+            poss = CrossRef\r
+            .findXDbRefs(dna, poss); // \r
+            cands = jalview.util.DBRefUtils.searchRefs(poss, xrf);\r
           }\r
           if (cands != null)\r
           {\r